Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0200
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.95 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.1  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   6.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   6.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   6.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 704 SATIARNDLPLYA---TPLMSPYNARLESSSTGSSFPADSPQARSL 576
           S  I +ND  +Y    TP+ + Y   +E+ +  S F  D+P  + +
Sbjct: 15  SPQILKNDKRIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPNRQKI 60


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 155
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 155
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 281 VPIAHETKPHDLTARKIRGRPENAGPDPVRNVRR 180
           VPI   TKP    AR  +G   N G + V  V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 281 VPIAHETKPHDLTARKIRGRPENAGPDPVRNVRR 180
           VPI   TKP    AR  +G   N G + V  V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 281 VPIAHETKPHDLTARKIRGRPENAGPDPVRNVRR 180
           VPI   TKP    AR  +G   N G + V  V++
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNVEAVQK 325


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -2

Query: 314 ELTVERRSYRIVPIAHETKPHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAA 135
           E T  +R  R      ++  ++ + RK R   +    D  R  R  S+    I ++    
Sbjct: 32  ERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKT 89

Query: 134 LY*NTNSLKRT*RTNIDQTRHRPHPLPV 51
           ++ N N+ K+    NI+     P P+PV
Sbjct: 90  IHNNNNNYKKLQYYNINYIEQIPVPVPV 117


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -2

Query: 314 ELTVERRSYRIVPIAHETKPHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAA 135
           E T  +R  R      ++  ++ + RK R   +    D  R  R  S+    I ++    
Sbjct: 32  ERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKT 89

Query: 134 LY*NTNSLKRT*RTNIDQTRHRPHPLPV 51
           ++ N N+ K+    NI+     P P+PV
Sbjct: 90  IHNNNNNYKKLQYYNINYIEQIPVPVPV 117


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -2

Query: 314 ELTVERRSYRIVPIAHETKPHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAA 135
           E T  +R  R      ++  ++ + RK R   +    D  R  R  S+    I ++    
Sbjct: 32  ERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKT 89

Query: 134 LY*NTNSLKRT*RTNIDQTRHRPHPLPV 51
           ++ N N+ K+    NI+     P P+PV
Sbjct: 90  IHNNNNNYKKLQYYNINYIEQIPVPVPV 117


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = -2

Query: 314 ELTVERRSYRIVPIAHETKPHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAA 135
           E T  +R  R      ++  ++ + RK R   +    D  R  R  S+    I ++    
Sbjct: 265 ERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKT 322

Query: 134 LY*NTNSLKRT*RTNIDQTRHRPHPLPV 51
           ++ N N+ K+    NI+     P P+PV
Sbjct: 323 IHNNNNNYKKLQYYNINYIEQIPVPVPV 350


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 20/88 (22%), Positives = 37/88 (42%)
 Frame = -2

Query: 314 ELTVERRSYRIVPIAHETKPHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAA 135
           E T  +R  R      ++  ++ + RK R   +    D  R  R  S+    I ++    
Sbjct: 32  ERTSRKRYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKT 89

Query: 134 LY*NTNSLKRT*RTNIDQTRHRPHPLPV 51
           ++ N N+ K+    NI+     P P+P+
Sbjct: 90  IHNNNNNYKKLQYYNINYIEQIPVPVPI 117


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 668 ATPLMSPYNARLESSSTGSSFP 603
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,367
Number of Sequences: 438
Number of extensions: 4453
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)