Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0198
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q056V7 Cluster: GTP-binding protein; n=1; Buchnera aphi...    34   2.3  

>UniRef50_Q056V7 Cluster: GTP-binding protein; n=1; Buchnera
           aphidicola str. Cc (Cinara cedri)|Rep: GTP-binding
           protein - Buchnera aphidicola subsp. Cinara cedri
          Length = 449

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 24/85 (28%), Positives = 46/85 (54%)
 Frame = +1

Query: 94  FIVSKWDAYGISYINKYIIIYRVRRGKM*YLSANKKYGLKMTGNNLLWYLTLTVS*FLHQ 273
           F++++  A+ I + NK+ +I + R+ K   +    KY LK   N  + YL+      L +
Sbjct: 291 FLINQNVAFFIIF-NKWDLISKERKKK---IKQENKYRLKFIRNIKIIYLSAIKKTNLKK 346

Query: 274 LALKIIKIVSQQKSYFSTAKLVTLV 348
           + L+I  I ++ K  FST+ L+ ++
Sbjct: 347 IFLQIKIIYNESKKIFSTSSLIKII 371


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,500,998
Number of Sequences: 1657284
Number of extensions: 12667049
Number of successful extensions: 24742
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24737
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)