Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0198
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    27   2.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.8  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   5.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.6  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   8.7  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    25   8.7  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 437 TKMSRFHLSVVHVFIRNLPTLYQTLILLQNTKVTN 333
           T +S F L++    I+ LP+++  +I++    VTN
Sbjct: 336 TSVSPFVLAIKEANIKGLPSVFNAVIIISVVSVTN 370


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3    FYYLHML--NMYALIEKY*IYATYLFIRNVTIFYRVKVGRL 119
            +Y LH L  N+YAL   + IYAT   +  +T F  +   RL
Sbjct: 2019 WYILHSLVPNIYALSTPFIIYATAFALAGLTTFSSLGDSRL 2059


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 470 DFPAFRLSP-TRTKMSRFHLSVVHVFIRNLPTLYQTLILLQNTKVTNFA 327
           D P  R S  +   +S F +++    IR LP++   +ILL    V N A
Sbjct: 313 DLPGLRTSDNSNVLISPFVIAIQLANIRALPSIMNVVILLSTLSVGNSA 361


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 478  KRNVWPRYFYATHIIIILFSYN*LFPC 558
            K  +W R F   +I+ +LF     +PC
Sbjct: 1266 KHGIWRRTFTGLYIVHLLFLLTIFYPC 1292


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 251 VRVRYHNKLFPVIFKPYFL---FALKYYILP 168
           +RVRYHN L P  F P  +     +K Y LP
Sbjct: 11  LRVRYHNPLPPPPFPPKLINIPNPVKQYALP 41


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 431 MSRFHLSVVHVFIRNLPTLYQTLILLQNTKVTN 333
           +S F L++    I+ LP+++  +I++    VTN
Sbjct: 338 VSPFVLAIQEANIKGLPSVFNAVIIISVVSVTN 370


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 274 VGVRIKI-Q*G*DTIINYFQSFLNHIFYLHLNITSYPDVPYILLCIYLCTK 125
           VG+R+K+ Q    T   YF     H FYL  ++ +Y        CI+L TK
Sbjct: 54  VGLRLKLPQTALATANIYF-----HRFYLRFSLKNYHYYEVAATCIFLATK 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,236
Number of Sequences: 5004
Number of extensions: 58823
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)