Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0198
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_253| Best HMM Match : GRP (HMM E-Value=0.61)                        29   3.0  
SB_40942| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)              28   5.2  
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    27   9.1  
SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)                   27   9.1  

>SB_253| Best HMM Match : GRP (HMM E-Value=0.61)
          Length = 356

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 507 VKITWPYVPLWAGFSRFQAVPNENKN 430
           VKITWP + +W G    + VPN  KN
Sbjct: 242 VKITWPEILVW-GKDCSEVVPNTEKN 266


>SB_40942| Best HMM Match : 7tm_1 (HMM E-Value=1.4013e-45)
          Length = 358

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 19  C*ICMLLLRNIRSMQLICLYVT*PFFIVSKWDAYGISYIN 138
           C    +L+  I SM + C Y+     +V KW  YG S +N
Sbjct: 232 CWAPFVLINGIYSMCIECPYIKPEIILVVKWLHYGNSLLN 271


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 235 IINYFQSFLNHIFYLHLNITSYPDVPYILLCIYLCTK-FRRRPTLTR*KMVTLRINK 68
           II Y    + +I  + +N+T +  V Y LLC Y   +   +   LT    V LR+++
Sbjct: 259 IIIYVTHIIFNIIIIVINVTLHRSVSYCLLCDYFSPECIHQSALLTLYTYVLLRLSQ 315


>SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)
          Length = 986

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 169 PDVPYILLCIYLCTKFRRRPTLT 101
           PD PY+    + C KFRR P +T
Sbjct: 475 PDHPYVNHERFYCVKFRRSPDIT 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,215,396
Number of Sequences: 59808
Number of extensions: 392300
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)