Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0198
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z78536-2|CAB01716.1|  363|Caenorhabditis elegans Hypothetical
           protein C07A4.3 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 458 FRLSPTRTKMSRFHLSVVHVFI 393
           FR SPTR+++SRF L+++  F+
Sbjct: 111 FRCSPTRSQVSRFLLNIIFDFV 132


>U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical
           protein C09B9.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 507 VKITWPYVPLWAGFSRFQAVPNENKNVPLSFICCAC 400
           +K+   Y P W        +P   + VPL F CC+C
Sbjct: 295 IKMVNFYRPTWMVIITMIFLPPYRRAVPLLFCCCSC 330


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 110 HFDTIKNGHVTYKQISCIDLIFLNKSIHI 24
           HF+TI N  +T + I+ +DL    K +H+
Sbjct: 128 HFETILNSELTARNITSLDLWKCAKKLHL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,873
Number of Sequences: 27780
Number of extensions: 322286
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)