Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0198
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 213 NDWK*FIMVSYPHCILILT 269
           NDWK   MV    C++I T
Sbjct: 517 NDWKFAAMVIDRMCLIIFT 535


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 413 INESGTFLFSLGTA*KRENPAQSGTYGH 496
           I+E   F +  G+  +R+   QSG Y H
Sbjct: 35  IHEWKYFDYDFGSEERRQAAIQSGEYDH 62


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 546 LVITK*NNYNVGCVKITWP 490
           LV T+   YN+  VK+ WP
Sbjct: 205 LVETEPIYYNLTMVKLNWP 223


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 94  FIVSKWDAYGISYINKYIIIYRV 162
           FIV+ W  Y  S++N   +IY V
Sbjct: 659 FIVTSWLGYMNSFVNP--VIYTV 679


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,995
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)