Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0197
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2E1J4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.79 
UniRef50_A5K4P1 Cluster: Asparagine-rich protein, putative; n=1;...    34   4.2  
UniRef50_Q8IJC7 Cluster: Centrin, putative; n=1; Plasmodium falc...    33   7.4  
UniRef50_P46764 Cluster: Mitochondrial 60S ribosomal protein L5;...    33   7.4  
UniRef50_Q6MBK5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.7  
UniRef50_Q5C1H3 Cluster: SJCHGC07789 protein; n=1; Schistosoma j...    33   9.7  

>UniRef50_A2E1J4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 2215

 Score = 36.3 bits (80), Expect = 0.79
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -3

Query: 181 KGKKQLHVNQFE*INVFQLNRSR*LQKKIIL-RSVCLFMSKMLNELNDSPTFLSKQL-RL 8
           KG     +NQFE +  F    S  L+ K IL  SV L  S+ L+   D P FLSK   RL
Sbjct: 790 KGPSNFELNQFENLIYFSSKSSNLLKNKFILGNSVILVESRPLSSYLDYPLFLSKVFDRL 849

Query: 7   Q 5
           Q
Sbjct: 850 Q 850


>UniRef50_A5K4P1 Cluster: Asparagine-rich protein, putative; n=1;
           Plasmodium vivax|Rep: Asparagine-rich protein, putative
           - Plasmodium vivax
          Length = 1974

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -3

Query: 181 KGKKQLHVNQFE*INVFQLNRSR*LQKKIILRSVCLFMSKMLNELNDSPTFLSKQLRLQI 2
           KGKK+  VN    +N+++  + +  +KKI     CL      N LND   +  ++  + +
Sbjct: 645 KGKKRTCVNSRSDMNIYKKEKKKENKKKIFTHEYCLLSKTARNILNDEENYKMQEKNVDV 704


>UniRef50_Q8IJC7 Cluster: Centrin, putative; n=1; Plasmodium
           falciparum 3D7|Rep: Centrin, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 249

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 20/70 (28%), Positives = 39/70 (55%)
 Frame = -1

Query: 372 NQVHISVGTS*NIEKRPCVFMKTNSIWHGSVYVKKLITIKIYLALHYLYEISPFILKVSS 193
           N  HI      +I K+ CV++K  +I++ ++Y+   I + +Y++    +E S  IL +  
Sbjct: 87  NSGHIDYNDFLDISKKICVYIKYYNIYNINIYI---IMLTVYMS----FEKSDAILLLII 139

Query: 192 YSIKKEKNSF 163
           + +KK+K  F
Sbjct: 140 HKLKKKKKKF 149


>UniRef50_P46764 Cluster: Mitochondrial 60S ribosomal protein L5;
           n=1; Acanthamoeba castellanii|Rep: Mitochondrial 60S
           ribosomal protein L5 - Acanthamoeba castellanii (Amoeba)
          Length = 177

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 273 KKLITIKIYLALHYLYEISPFILKVSSYSIKKE--KNSFMSISSNR 142
           + L  IK+YL + Y+    PFI KV    IKK+  K  F+S+S N+
Sbjct: 46  RSLKFIKLYLMILYISNQKPFIKKVKFSYIKKKILKRFFISVSLNK 91


>UniRef50_Q6MBK5 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Protochlamydia amoebophila UWE25|Rep:
           Putative uncharacterized protein - Protochlamydia
           amoebophila (strain UWE25)
          Length = 249

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
 Frame = -3

Query: 313 HEDEFNLAR*CLCEETHYDQNLFGLALSLRNITFYFEGIF---LQH*KGKKQLHVNQFE* 143
           ++  F   +  L E+ +Y QNL  +   L+++TF +EG F    +  +G K+LH   F  
Sbjct: 143 NQSNFEKIKNALLEKFNYPQNLQDIEKLLKSLTFKYEGDFDRVTKGIQGFKELHYEDFLE 202

Query: 142 INVFQLNRSR*LQKKIILRSV-----CLFMSKMLNELNDSPTF 29
           I +  + +    Q  I+++        LF S    EL +  T+
Sbjct: 203 IAMQLVGKDNKRQLAILVKGTSAPKSLLFTSLKEEELKERSTY 245


>UniRef50_Q5C1H3 Cluster: SJCHGC07789 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC07789 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 185

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 461 PHNFPIDKRIVRKQINSTITH*NDFRLLQLIRFTL 357
           PH   IDK  +R+ I S  +H  D+ LL+++ + L
Sbjct: 131 PHIISIDKETLRRNITSAFSHRGDYMLLRMLYYEL 165


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,509,830
Number of Sequences: 1657284
Number of extensions: 9876258
Number of successful extensions: 17390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17387
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)