Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0196
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    94   2e-20
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 50/95 (52%), Positives = 58/95 (61%)
 Frame = -2

Query: 538 IRFCIVIHSRGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 359
           I F I+    GLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 358 GLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGI 254
           GL  N  +  IQF+ +FIGVNI F PQHFLGL G+
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGM 442



 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 42/76 (55%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
 Frame = -3

Query: 732 ILAIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN- 556
           +L+I LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++ 
Sbjct: 283 MLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSR 342

Query: 555 PNIL*RLGFVLLFTVG 508
             +L  +GF++LFT+G
Sbjct: 343 VPMLYAIGFLILFTIG 358


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 169 TDNREIYEPNEEIIFHEIYESG*SEYRRGFQLNLKNVVEKMLYLLQ 306
           T NRE+ E NEEI+   +     S   R  +L+L+N +  +L  L+
Sbjct: 452 TTNREVEEENEEILL-VLLNIISSVIGRNAELDLENPISSLLPALE 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,135
Number of Sequences: 5004
Number of extensions: 35638
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)