Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0196
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 105 3e-23
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 9.0
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 105 bits (253), Expect = 3e-23
Identities = 53/94 (56%), Positives = 60/94 (63%)
Frame = -2
Query: 538 IRFCIVIHSRGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 359
I F + GLTGVILANSS+D+ +HDTYYVVAHFHYVLS + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 358 GLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAG 257
G N KI F+ +FIGVNITFFPQHFLGLAG
Sbjct: 106 GYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAG 139
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/55 (58%), Positives = 44/55 (80%)
Frame = -3
Query: 672 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVLLFTVG 508
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFV LFT+G
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIG 55
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 92 SIE*YQNLPPAEHSYNELPIL 30
S+E Q PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -2
Query: 361 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAG 257
TG N KI F+ +FIGVNITFFPQHFLGLAG
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAG 53
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 92 SIE*YQNLPPAEHSYNELPIL 30
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 693 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 544
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 374 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNPRR 246
+ FIY + FL +KN F+ YW+ YN F W +R
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRTQR 58
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 92 SIE*YQNLPPAEHSYNELPIL 30
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 92 SIE*YQNLPPAEHSYNELPIL 30
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 92 SIE*YQNLPPAEHSYNELPIL 30
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 92 SIE*YQNLPPAEHSYNELPIL 30
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 92 SIE*YQNLPPAEHSYNELPIL 30
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 103 ISHHQLNDIKIYHQQNIHIMNYQF 32
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,326,583
Number of Sequences: 59808
Number of extensions: 211087
Number of successful extensions: 311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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