Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0196
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 304  GVNITFFPQHFLGLAGILDDIQIIQTHIFHEI 209
            G ++T +  H+    G LD++Q+ +    HE+
Sbjct: 1431 GASLTGYTLHYRTAHGNLDELQLSRHATSHEL 1462


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 304  GVNITFFPQHFLGLAGILDDIQIIQTHIFHEI 209
            G ++T +  H+    G LD++Q+ +    HE+
Sbjct: 1427 GASLTGYTLHYRTAHGNLDELQLSRHATSHEL 1458


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 287 FSTTFFRFSWNPRRYSDY 234
           ++T FFR+   P  YS++
Sbjct: 242 YNTKFFRYRITPELYSEH 259


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 100 SHHQLNDIKIYHQQNIHIM 44
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,582
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)