Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0194
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   100   2e-22
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   8.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  100 bits (240), Expect = 2e-22
 Identities = 51/91 (56%), Positives = 58/91 (63%)
 Frame = -3

Query: 526 IRFCIFFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 347
           I F I FT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 346 GLSLNSYILKIQFFTIFIGVNITFFPQHFLG 254
           GL  N  +  IQF+ +FIGVNI F PQHFLG
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHFLG 438



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 29/50 (58%), Positives = 42/50 (84%)
 Frame = -1

Query: 693 IV*AHHISTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 544
           +V +HH+ TVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWS 341


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 200 FMKYMSLDNLNIVEVFQLT*KMLWKKCYIYSNKYC 304
           +++  + +N  + EVFQL   +  KK + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,250
Number of Sequences: 5004
Number of extensions: 35870
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)