Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0194
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 110 1e-24
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 9.1
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 110 bits (264), Expect = 1e-24
Identities = 53/91 (58%), Positives = 60/91 (65%)
Frame = -3
Query: 526 IRFCIFFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 347
I F FT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 346 GLSLNSYILKIQFFTIFIGVNITFFPQHFLG 254
G N KI F+ +FIGVNITFFPQHFLG
Sbjct: 106 GYCYNELYGKIHFWIMFIGVNITFFPQHFLG 136
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = -1
Query: 660 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVF 511
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVF
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVF 50
Score = 31.9 bits (69), Expect = 0.56
Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Frame = -2
Query: 329 LYTKNSIFYNIYWSKYNIFSTTFFRLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 150
LY K + F F LAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171
Query: 149 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 18
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = -3
Query: 349 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLG 254
TG N KI F+ +FIGVNITFFPQHFLG
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLG 50
Score = 31.9 bits (69), Expect = 0.56
Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Frame = -2
Query: 329 LYTKNSIFYNIYWSKYNIFSTTFFRLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 150
LY K + F F LAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85
Query: 149 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 18
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 86 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -2
Query: 263 FFRLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 87
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 86 PSS---IE*YQNLPPAEHSYNELPIL 18
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -2
Query: 263 FFRLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 87
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 86 PSS---IE*YQNLPPAEHSYNELPIL 18
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -2
Query: 263 FFRLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 87
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 86 PSS---IE*YQNLPPAEHSYNELPIL 18
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 681 HHISTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 532
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -2
Query: 263 FFRLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 87
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 86 PSS---IE*YQNLPPAEHSYNELPIL 18
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Frame = -2
Query: 263 FFRLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLNL 87
F LAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 86 PSS---IE*YQNLPPAEHSYNELPIL 18
SS +E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 263 FFRLAGIPRRYSDYPD 216
F LAG PRRYSD+ D
Sbjct: 2 FLGLAGFPRRYSDFAD 17
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 91 ISHHQLNDIKIYHQQNIHIMNYQF 20
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 362 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIF 273
+ FIY + FL +KN F+ YW+ YN F
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAF 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,146
Number of Sequences: 59808
Number of extensions: 214053
Number of successful extensions: 390
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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