Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0193
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.8  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.8  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   6.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   8.7  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 293 CSSKEIRLAPGLPEVYGEKKTPNYAVAVVKKGTSFNKME 177
           C SK I+LA   P V+GEK      +A+  K   +NK E
Sbjct: 178 CESKGIQLAAYAPLVHGEKFGNKQLLAIASK---YNKSE 213


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 9   WFVDAWQT*TAGEEITKVLNALIRFYDPLVYEII 110
           W V AW+       I K+ +  I F+ PLV   I
Sbjct: 202 WSVVAWRNSLLFHSIDKITSLFIHFFPPLVLHTI 235


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 329 LRFGISRRHEGSCSSKEI----RLAPGLPEVYGEKKTPNYAV 216
           L +   R ++G+ +++E+    R  PGLPE++   + PN  V
Sbjct: 312 LFYQFDRDNDGALNNEELSALFRHTPGLPEIWVSSQFPNSTV 353


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 477 TNSG-AP*PLSILRCSWPCSNSQWL*SEYCRPRRILSDSPRTLVNHSGWFEEPASANCFI 653
           +NSG AP  L  L  ++  +    L S+   P    S  P  L  H+  FE P   N   
Sbjct: 374 SNSGFAPLELEGLSQAYTSTIQSSLPSKEVFPLEKYSSEPWNL--HNLPFENPCLFNYSF 431

Query: 654 FSLSGLSLARTSLCPISPCHG 716
             LS L++ R S+  +   HG
Sbjct: 432 SDLSSLTITRLSIGMVFYTHG 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,850
Number of Sequences: 5004
Number of extensions: 68831
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)