Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0193
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373...    29   3.9  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    29   5.2  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   5.2  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    28   9.1  

>01_05_0743 +
           24835349-24836009,24836925-24837068,24837154-24837306,
           24837627-24837742,24837826-24837993,24838610-24838737,
           24838827-24838926,24839119-24839205
          Length = 518

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -2

Query: 538 LFEQGQLH-RSIERGHGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASE 362
           L E G+L  R I RGH +      LC      +  C +M V  F RD++P        SE
Sbjct: 146 LCEGGELFDRIIARGHYSERAAAALCREIVAVVHSCHSMGV--FHRDLKPENFLFLSKSE 203

Query: 361 TDCLKS 344
              LK+
Sbjct: 204 DSPLKA 209


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 435  HLAKATFDVTHNLTTNSGAP*PLSIL-RCSWPCSNS 539
            ++ KAT  + ++ ++++    P  +L +CSW CSNS
Sbjct: 1074 NIIKATTSIFNSASSSTPPTSPTPVLAKCSWACSNS 1109


>09_04_0308 +
           16567361-16568854,16568946-16569068,16569372-16569649,
           16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 435 HLAKATFDVTHNLTTNSGAP*PLSIL-RCSWPCSNS 539
           ++ KAT  + ++ ++++    P  +L +CSW CSNS
Sbjct: 641 NIIKATTSIFNSASSSTPPTSPTPVLAKCSWACSNS 676


>06_01_0018 +
           194295-194640,194679-194917,195737-195885,196248-196342,
           196685-196780,197248-197399,198683-198823,199068-199319,
           199463-199603,199686-200003,200146-200232,201025-202006,
           202091-202179,202968-203072,203155-204306,204844-205359,
           205455-205650,206299-207182
          Length = 1979

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 177 FHLIEGCSFFDDSHSVVRSFLFSVYLWKTGCKTYFFAAAATLMSSTDAKSEPLS 338
           +H  +G    DD   V+++ LFS+ +    C+     + +  +S  +AK   L+
Sbjct: 394 WHNSDGAICLDDQERVIKTILFSMSILPDVCQPLLIVSTSASLSLWEAKFNRLA 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,122,716
Number of Sequences: 37544
Number of extensions: 459598
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)