Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0193
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21) 51 9e-07
SB_44172| Best HMM Match : Pkinase_Tyr (HMM E-Value=6.3e-20) 33 0.33
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07) 31 1.3
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0) 31 1.3
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45) 28 7.0
SB_58046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_39713| Best HMM Match : BESS (HMM E-Value=1.9) 28 9.2
SB_30335| Best HMM Match : BESS (HMM E-Value=1.9) 28 9.2
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
Length = 291
Score = 51.2 bits (117), Expect = 9e-07
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = -1
Query: 272 LAPGLPEVYGEK-KTPNYAVAVVKKGTSFNKMEDLRGKKSCHSSYGTFSGLDAPLYYLIN 96
L P + E YG K K +YAVA+V+ T+ N + L+G +CH G P+ +LI
Sbjct: 98 LRPVVAEDYGSKDKHIHYAVALVRSTTTVN-ITTLKGAITCHPRAEDMIGWKIPVGFLIW 156
Query: 95 KRIIKPDQC-IKNFGDFFSGGSCLPGV 18
K++++ C + N F G SC+PGV
Sbjct: 157 KKLMQRKDCDVYNSAGEFFGKSCVPGV 183
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = -2
Query: 490 APELVVRLCVTSNVALAKCRAMSVFAFSRDIRPI----LDCVQEASETDCLKSVQDNGSD 323
AP+L R C S+ + KC+A++ A SR + L CV+ TDC+ +Q + +D
Sbjct: 23 APKLG-RWCCISDAEVEKCQALAHVA-SRVVTSNETVNLTCVRGDGVTDCMSRIQRDEAD 80
Query: 322 LASVDDMRVAAAAKKYVLHPV 260
L ++ + + A KY L PV
Sbjct: 81 LVTLGEEDIYIAGAKYGLRPV 101
>SB_44172| Best HMM Match : Pkinase_Tyr (HMM E-Value=6.3e-20)
Length = 637
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 484 REHRDLFQYFGVVGLVQIVNGFDRNIVGHVGFCLIALELW 603
RE+RDLF ++G V GF N+V +G C + LW
Sbjct: 484 REYRDLFNELSIMGQV----GFHPNVVNLIGACTVDGPLW 519
>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 963
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 484 REHRDLFQYFGVVGLVQIVNGFDRNIVGHVGFCLIALELW 603
RE+RDLF ++G V GF N+V +G C + LW
Sbjct: 822 REYRDLFNELSIMGQV----GFHPNVVNLIGACTVDGPLW 857
>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
Length = 1306
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 491 CSRISRQIVCHIKRGFSQMQSYVRVRVQ 408
C+R+ RQ++CH+KR S + ++ ++
Sbjct: 534 CTRVPRQVLCHVKRNLSGLFDITQMNLE 561
>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
Length = 1821
Score = 30.7 bits (66), Expect = 1.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 491 CSRISRQIVCHIKRGFSQMQSYVRVRVQ 408
C+R+ RQ++CH+KR S + ++ ++
Sbjct: 976 CTRVPRQVLCHVKRNLSGLFDITQMNLE 1003
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -1
Query: 239 KKTPNYAVAVVKKGT-SFNKMEDLRGKKS--CHSSYGTFSGLDAPLYYLINKRIIKPDQC 69
KK + V ++ G SF ++ L+ S H + +SGL+ Y + ++ I D+C
Sbjct: 5353 KKLRDDGVHIISVGVGSFVSLQQLKDMASDPAHVFHVEYSGLNLIAYAIRDRICIDRDEC 5412
Query: 68 IKNFGDFFSGGSCL 27
I N F+G C+
Sbjct: 5413 IGN--PCFNGAKCV 5424
>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -1
Query: 218 VAVVKKGTSFNKMEDLRGKKSCHSSYGTFSGL-DAPLY-YLINKRIIKPDQ 72
V ++KKG + +K E+ RG S F+ + + LY YL+ ++IIKP+Q
Sbjct: 193 VPILKKGDT-SKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQ 242
>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 218 VAVVKKGTSFNKMEDLRGKKSCHSSYGTFSGL-DAPLY-YLINKRIIKPDQ 72
V ++KKG +K E+ RG S F+ + + LY YL+ ++IIKP+Q
Sbjct: 896 VPILKKGDP-SKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQ 945
>SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)
Length = 469
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 218 VAVVKKGTSFNKMEDLRGKKSCHSSYGTFSGL-DAPLY-YLINKRIIKPDQ 72
V ++KKG +K E+ RG S F+ + + LY YL+ ++IIKP+Q
Sbjct: 193 VPILKKGDP-SKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQ 242
>SB_58046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -2
Query: 730 SWAARPWQGLIGHNDVLAKLSPLREKIKQLADAGSSNQP 614
+W+A W GL + K++ R+ +K+ +D + P
Sbjct: 24 TWSAGSWMGLSDQRQTVKKVTDYRQNMKKTSDYRPRSSP 62
>SB_39713| Best HMM Match : BESS (HMM E-Value=1.9)
Length = 237
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 484 REHRDLFQYFGVVGLVQIVNGFDRNIVGHVGFCLIAL 594
RE RD F + G+VQ+V + + GH+ ++AL
Sbjct: 146 REERDAF-FLNTQGIVQLVQRYRNGVRGHLKAVVLAL 181
>SB_30335| Best HMM Match : BESS (HMM E-Value=1.9)
Length = 386
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 484 REHRDLFQYFGVVGLVQIVNGFDRNIVGHVGFCLIAL 594
RE RD F + G+VQ+V + + GH+ ++AL
Sbjct: 70 REERDAF-FLNTQGIVQLVQRYRNGVRGHLKAVVLAL 105
>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1902
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -1
Query: 164 KKSCHSSYGTFSGLDAPLYYLINKRIIKPDQCIKNFGDFFSGGSCLPGVD 15
++ C + Y F G D + LI I D + F D GGS +PGVD
Sbjct: 161 RRRCWARYCKFDGFDR--WLLIPG--ISEDPIKEPFQDLAIGGSAIPGVD 206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,162,044
Number of Sequences: 59808
Number of extensions: 533891
Number of successful extensions: 1196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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