Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0193
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81125-9|CAL64006.1|  112|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U29380-18|ABB88224.1|  733|Caenorhabditis elegans Zygote defecti...    29   4.6  
U29380-17|AAA68733.3|  736|Caenorhabditis elegans Zygote defecti...    29   4.6  
U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defecti...    29   4.6  
U29380-15|AAS60253.1|  777|Caenorhabditis elegans Zygote defecti...    29   4.6  
EF035034-1|ABK34454.1|  112|Caenorhabditis elegans heat-shock pr...    29   4.6  
AY487140-1|AAR32790.1|  733|Caenorhabditis elegans centrosome at...    29   4.6  
Z81125-8|CAB03380.1|  109|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81125-9|CAL64006.1|  112|Caenorhabditis elegans Hypothetical
           protein T22A3.2b protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/92 (26%), Positives = 43/92 (46%)
 Frame = -2

Query: 724 AARPWQGLIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQS 545
           +A  W   + HND + K++   EK +   DAG     +   KV G+  +I+   ++    
Sbjct: 10  SAASWDWPLQHNDGVVKVTNTSEKFEVGLDAGFFGPNDIDVKVNGI--EIIIHLRHDLLQ 67

Query: 544 H*LFEQGQLHRSIERGHGAPELVVRLCVTSNV 449
           +   E G ++R + R +  PE V    V S++
Sbjct: 68  NRPTEYGIVNREVHRTYKLPEDVDPSTVRSHL 99


>U29380-18|ABB88224.1|  733|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform d protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/114 (19%), Positives = 45/114 (39%)
 Frame = -2

Query: 703 LIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQSH*LFEQG 524
           L   NDVL +    R++++ + DA  S+  EW T       +    +Q   +   L  Q 
Sbjct: 328 LTNENDVLRRSDKERQRLQTVLDAAQSDLDEWKTVANQYQKEAELSKQQDKEIKELLSQN 387

Query: 523 QLHRSIERGHGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASE 362
           +  +S    H      +     + +A  + +   + A + +++  LD  +   E
Sbjct: 388 KALKS-RLDHHVKSATLEDANKNGIAQLRTQVGGLTALNTELKASLDSKKRCVE 440


>U29380-17|AAA68733.3|  736|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform a protein.
          Length = 736

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/114 (19%), Positives = 45/114 (39%)
 Frame = -2

Query: 703 LIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQSH*LFEQG 524
           L   NDVL +    R++++ + DA  S+  EW T       +    +Q   +   L  Q 
Sbjct: 328 LTNENDVLRRSDKERQRLQTVLDAAQSDLDEWKTVANQYQKEAELSKQQDKEIKELLSQN 387

Query: 523 QLHRSIERGHGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASE 362
           +  +S    H      +     + +A  + +   + A + +++  LD  +   E
Sbjct: 388 KALKS-RLDHHVKSATLEDANKNGIAQLRTQVGGLTALNTELKASLDSKKRCVE 440


>U29380-16|AAS60254.1|  761|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform c protein.
          Length = 761

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/114 (19%), Positives = 45/114 (39%)
 Frame = -2

Query: 703 LIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQSH*LFEQG 524
           L   NDVL +    R++++ + DA  S+  EW T       +    +Q   +   L  Q 
Sbjct: 328 LTNENDVLRRSDKERQRLQTVLDAAQSDLDEWKTVANQYQKEAELSKQQDKEIKELLSQN 387

Query: 523 QLHRSIERGHGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASE 362
           +  +S    H      +     + +A  + +   + A + +++  LD  +   E
Sbjct: 388 KALKS-RLDHHVKSATLEDANKNGIAQLRTQVGGLTALNTELKASLDSKKRCVE 440


>U29380-15|AAS60253.1|  777|Caenorhabditis elegans Zygote defective:
           embryonic lethalprotein 12, isoform b protein.
          Length = 777

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/114 (19%), Positives = 45/114 (39%)
 Frame = -2

Query: 703 LIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQSH*LFEQG 524
           L   NDVL +    R++++ + DA  S+  EW T       +    +Q   +   L  Q 
Sbjct: 328 LTNENDVLRRSDKERQRLQTVLDAAQSDLDEWKTVANQYQKEAELSKQQDKEIKELLSQN 387

Query: 523 QLHRSIERGHGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASE 362
           +  +S    H      +     + +A  + +   + A + +++  LD  +   E
Sbjct: 388 KALKS-RLDHHVKSATLEDANKNGIAQLRTQVGGLTALNTELKASLDSKKRCVE 440


>EF035034-1|ABK34454.1|  112|Caenorhabditis elegans heat-shock
           protein 12.1 protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/92 (26%), Positives = 43/92 (46%)
 Frame = -2

Query: 724 AARPWQGLIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQS 545
           +A  W   + HND + K++   EK +   DAG     +   KV G+  +I+   ++    
Sbjct: 10  SAASWDWPLQHNDGVVKVTNTSEKFEVGLDAGFFGPNDIDVKVNGI--EIIIHLRHDLLQ 67

Query: 544 H*LFEQGQLHRSIERGHGAPELVVRLCVTSNV 449
           +   E G ++R + R +  PE V    V S++
Sbjct: 68  NRPTEYGIVNREVHRTYKLPEDVDPSTVRSHL 99


>AY487140-1|AAR32790.1|  733|Caenorhabditis elegans centrosome
           attachment protein A protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/114 (19%), Positives = 45/114 (39%)
 Frame = -2

Query: 703 LIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQSH*LFEQG 524
           L   NDVL +    R++++ + DA  S+  EW T       +    +Q   +   L  Q 
Sbjct: 328 LTNENDVLRRSDKERQRLQTVLDAAQSDLDEWKTVANQYQKEAELSKQQDKEIKELLSQN 387

Query: 523 QLHRSIERGHGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASE 362
           +  +S    H      +     + +A  + +   + A + +++  LD  +   E
Sbjct: 388 KALKS-RLDHHVKSATLEDANKNGIAQLRTQVGGLTALNTELKASLDSKKRCVE 440


>Z81125-8|CAB03380.1|  109|Caenorhabditis elegans Hypothetical
           protein T22A3.2a protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 24/92 (26%), Positives = 44/92 (47%)
 Frame = -2

Query: 724 AARPWQGLIGHNDVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQS 545
           +A  W   + HND + K++   EK +   DAG     +   KV G+  +I+   ++ ++ 
Sbjct: 10  SAASWDWPLQHNDGVVKVTNTSEKFEVGLDAGFFGPNDIDVKVNGI--EIIIHLRHDNRP 67

Query: 544 H*LFEQGQLHRSIERGHGAPELVVRLCVTSNV 449
               E G ++R + R +  PE V    V S++
Sbjct: 68  ---TEYGIVNREVHRTYKLPEDVDPSTVRSHL 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,664,910
Number of Sequences: 27780
Number of extensions: 388693
Number of successful extensions: 1038
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)