Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0193
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43245.1 68414.m04985 expressed protein                             31   0.61 
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea...    29   3.3  

>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -2

Query: 490 APELVVRLCVTSNVALAKCRAMSVFAFSRDI----RPILDCVQEASE 362
           AP+L++ L V S+V   KC  +      RDI    R IL CV++ S+
Sbjct: 439 APKLLMELSVESDVKCTKCLMLETSNSHRDIKEKSRQILSCVRDISQ 485


>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
           family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
           EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
           repeat (6 copies,1 weak)
          Length = 757

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 688 DVLAKLSPLREKIKQLADAGSSNQPEWFTKVLGLSDKILRGRQYSDQSH 542
           D++AK+  ++  ++      +       T+VL LSD + R    SD SH
Sbjct: 477 DIVAKVESIKRDLQAAGAEKNEETGAGTTRVLSLSDILYRSEANSDSSH 525


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,809,984
Number of Sequences: 28952
Number of extensions: 367016
Number of successful extensions: 907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)