Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0191
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 564 MKTNSIWHGSVYVKKLITIKIYLALHYLYEISPFI 460
           ++ N  W  S Y+K L T  I L    +  I PF+
Sbjct: 110 LQQNECWQNSTYLKCLTTFTINLIAEVINRIYPFL 144


>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = -2

Query: 591 NIEKRPCVFMKTNSIWHGSVYVKKLITIKIYLALHYLYEISPFILKVSSYSIKKEKNSFM 412
           NIE+   + +  ++IW    + +  I +  + ++ Y +++S  ++ +SS S+  E   F 
Sbjct: 67  NIERIKRIQISASTIWAACKHTENTIAMISHSSVLYFFDVSTKMI-ISSISLGVESRLF- 124

Query: 411 SISSN 397
            +SSN
Sbjct: 125 DVSSN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,124
Number of Sequences: 27780
Number of extensions: 243341
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)