Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0190
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   116   5e-27
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   110   2e-25
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    30   0.40 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   2.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.8  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   4.9  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   8.6  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   8.6  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   8.6  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.6  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  116 bits (278), Expect = 5e-27
 Identities = 54/75 (72%), Positives = 63/75 (84%)
 Frame = -2

Query: 557 ENAAHTPHKAGSGVKFPVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIM 378
           E A   P + G  + F VFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIM
Sbjct: 164 ELAPTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIM 223

Query: 377 QLLRDNLTLWTSDTQ 333
           QLLRDNLTLWTSD +
Sbjct: 224 QLLRDNLTLWTSDAE 238



 Score =  106 bits (255), Expect = 3e-24
 Identities = 50/80 (62%), Positives = 60/80 (75%)
 Frame = -3

Query: 739 LGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISK 560
           L +L+KHLIP A++ ESKVFY KMKGDYYRYLAE A GE R    + S + Y+ A EI+ 
Sbjct: 103 LTVLEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIAT 162

Query: 559 AKMQPTHPIRLGLALNFQSF 500
           A++ PTHPIRLGLALNF  F
Sbjct: 163 AELAPTHPIRLGLALNFSVF 182


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  110 bits (264), Expect = 2e-25
 Identities = 49/69 (71%), Positives = 59/69 (85%)
 Frame = -2

Query: 539 PHKAGSGVKFPVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 360
           P + G  + F VFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDN
Sbjct: 169 PMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDN 228

Query: 359 LTLWTSDTQ 333
           LTLWTSD +
Sbjct: 229 LTLWTSDAE 237



 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 46/80 (57%), Positives = 57/80 (71%)
 Frame = -3

Query: 739 LGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISK 560
           L +L+KHLIP A+  ESKVFY KMKGDYYRYLAE   GE      + S +AY+ A +I+ 
Sbjct: 102 LSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAV 161

Query: 559 AKMQPTHPIRLGLALNFQSF 500
           A++ PT P+RLGLALNF  F
Sbjct: 162 AELPPTDPMRLGLALNFSVF 181


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 569 NQQGENAAHTPHKAGSGVKFPVFYYEILNS 480
           NQ   N AH P KA  G +F VFY +++ +
Sbjct: 407 NQAHFNEAHPPPKAVQGYRFNVFYPDLIGT 436


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 652  RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFQSFIMRY 488
            RY+  ++   E R    ED+++A + ++  + A +QP H  I L LA+N    +  Y
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINASHKLKNY 1105


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 733  LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 596
            +++K  IP++   E+K  Y +  GD+     +L E A  E  H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 152 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 60
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 90  YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 215
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 129 RNGKVRCERLLTFLQATARVGFGDDTAPDDVLECYSFSYKHREN 260
           RNG  +C RLL    A++ +       P D L     S+   ++
Sbjct: 367 RNGAKKCARLLLSFYASSSIPNNQGQYPTDFLSSKDMSFPENDD 410


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 3   RNRNFNNLSYKYLYSSGQLDICNPV*IQKYKTVKDDTTFNFRRNGK 140
           RN+ +     + L SS   DIC    +  Y    DD  F F +N K
Sbjct: 122 RNQFYIRFCLELLSSSQLSDICIKDFVTSYLVPYDDVRFFFYKNSK 167


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 542 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 643
           C L+F L + K+ L+    I+Y  + GFS  H C
Sbjct: 46  CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,743
Number of Sequences: 5004
Number of extensions: 58171
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)