Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0190
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 1e-24
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 105 3e-23
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 31 0.98
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10) 29 4.0
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012) 28 9.1
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 110 bits (264), Expect = 1e-24
Identities = 53/82 (64%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Frame = -2
Query: 560 GENAAHTPHKAGSGVKFPVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLI 381
G+ A P + G + F VF+YEI + ++AC+LAKQAFDDAIAELD+LNED YKDSTLI
Sbjct: 228 GKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAFDDAIAELDSLNEDQYKDSTLI 287
Query: 380 MQLLRDNLTLWTSDTQGD-GDE 318
MQLLRDNLTLW+S+ Q D GD+
Sbjct: 288 MQLLRDNLTLWSSENQEDQGDD 309
Score = 98.3 bits (234), Expect = 6e-21
Identities = 50/82 (60%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = -2
Query: 539 PHKAGSGVKFPVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 360
P + G + F VFYYEI+ +AC LAK+AFDDAIAELDTL+ED YKDSTLIMQLLRDN
Sbjct: 146 PIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDAIAELDTLSEDQYKDSTLIMQLLRDN 205
Query: 359 LTLWTSDTQG--DGDEPAEGGD 300
LT+ Q + E AE GD
Sbjct: 206 LTVVEKALQAYKEAKEAAETGD 227
Score = 96.3 bits (229), Expect = 2e-20
Identities = 49/82 (59%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = -3
Query: 739 LGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISK 560
L LL+ LIP A + ESKVFYLKMKGDYYRY EVA + R VV+ + KAY +A EI++
Sbjct: 77 LKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREVVQKAMKAYSEAQEIAE 136
Query: 559 --AKMQPTHPIRLGLALNFQSF 500
K+ PT PIRLGLALNF F
Sbjct: 137 KDPKLPPTDPIRLGLALNFSVF 158
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Frame = -3
Query: 613 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFQSF 500
+VVE + +AY++A E ++ K+ PT PIRLGLALNF F
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVF 247
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 105 bits (253), Expect = 3e-23
Identities = 48/74 (64%), Positives = 58/74 (78%)
Frame = -2
Query: 539 PHKAGSGVKFPVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDN 360
P + G + F VFYYEI N P +AC+LAK+AFDDAIA LD L ++SYKDSTLIMQLLRDN
Sbjct: 173 PIRLGLALNFSVFYYEIENKPPEACKLAKEAFDDAIAVLDNLKDESYKDSTLIMQLLRDN 232
Query: 359 LTLWTSDTQGDGDE 318
LTLWTS+ +G +
Sbjct: 233 LTLWTSEQDQEGQD 246
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Frame = -3
Query: 739 LGLLDKHLIPKAS---NPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFE 569
L +L+ +L+ N E+KVFYLKM+GDY+RYL EVA G++R +E S++AY+DA
Sbjct: 104 LDILENYLLKDGQDDINTEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA-S 162
Query: 568 ISKAKMQPTHPIRLGLALNFQSF 500
++ P+HPIRLGLALNF F
Sbjct: 163 AKAEELSPSHPIRLGLALNFSVF 185
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = -3
Query: 739 LGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 623
LG+L++ LIP A + E+KVFY K+KGDYYRYLAE + G+
Sbjct: 178 LGILER-LIPGAEDEENKVFYFKLKGDYYRYLAEFSHGQ 215
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 443 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 306
DD + D ++DS + + QL L+ + LW S TQGD D A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898
>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
Length = 416
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -3
Query: 739 LGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISK 560
LGL++ H+ PK+ + ++F +Y+ +L V T+ +E + Y + SK
Sbjct: 117 LGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFSK 174
Query: 559 A 557
A
Sbjct: 175 A 175
>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
Length = 983
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 500 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD 327
YY I + K Q FDD + +ED+ +D+T ++L+ T+D GD
Sbjct: 505 YYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATTAIELMNAP----TTDVHGD 558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,823,310
Number of Sequences: 59808
Number of extensions: 447752
Number of successful extensions: 1392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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