Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0190
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    26   0.43 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.43 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.43 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    26   0.43 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   7.0  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   7.0  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 329 DGDEPAEGGDN*YLAALTPAHAFVLSVFIRKRVTFENVVWRGIITEA 189
           D   P + GD   L  L PA+ F++S  +R   + E   +   +TEA
Sbjct: 80  DKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFNPCLTEA 126


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +3

Query: 540 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 650
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +3

Query: 540 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 650
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 329 DGDEPAEGGDN*YLAALTPAHAFVLSVFIRKRVTFENVVWRGIITEA 189
           D   P + GD   L  L PA+ F++S  +R   + E   +   +TEA
Sbjct: 96  DKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFNPCLTEA 142


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 153 RLLTFLQATARVGFGDDTAPDDVLEC 230
           RL T LQAT   G   +  P DV EC
Sbjct: 131 RLNTRLQATLNCGLRLEKFPFDVQEC 156


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 6   NRNFNNLSYKYLYSS 50
           N N+NN +YKY Y++
Sbjct: 321 NYNYNNNNYKYNYNN 335


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 6   NRNFNNLSYKYLY 44
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 6   NRNFNNLSYKYLY 44
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 6   NRNFNNLSYKYLY 44
           N N+NN +YK LY
Sbjct: 88  NYNYNNNNYKKLY 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,930
Number of Sequences: 438
Number of extensions: 3808
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)