Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0189
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    26   0.24 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.24 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.7  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   6.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.7  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.9  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    21   8.9  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 43  GTWRPPCHWKTPPTSANKAAN*SNCGTVYSS 135
           G W P   W +PP  A  A++ +  G +YSS
Sbjct: 117 GKWCPRREWSSPP-DARAASDAARRGVLYSS 146


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 43  GTWRPPCHWKTPPTSANKAAN*SNCGTVYSS 135
           G W P   W +PP  A  A++ +  G +YSS
Sbjct: 273 GKWCPRREWSSPP-DARAASDAARRGVLYSS 302


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 444 QRLCMMVIQCLMTV 403
           QR C +VIQC + +
Sbjct: 144 QRSCQVVIQCYLEI 157


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 413 KHWITIIQSRW 445
           KHW  I Q +W
Sbjct: 193 KHWTGIFQKKW 203


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +2

Query: 401 VTVIKHWITIIQSRWDEVWQWAMQRGGKLDAHMQSLETWTSCSRSCCSGSP 553
           + + KHW+TI++  W    + +M+  G      +     TS   +   G+P
Sbjct: 133 IIISKHWVTIMK-EW-SFMEMSMRNYGSSINMKKRFVVMTSVIMTLALGNP 181


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 469 HGPLPYLVPA 440
           H P+PYL PA
Sbjct: 163 HQPVPYLTPA 172


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 191 ASLCEHAPGVAIGRGDQASLL 253
           A+LC H     +G  D  SLL
Sbjct: 47  ANLCTHVNYAFLGLNDDGSLL 67


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 248 LLGQLPEGDEETQQQIRD 301
           +LG  PE  E+  Q++RD
Sbjct: 11  ILGVYPEIQEKVYQELRD 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,425
Number of Sequences: 336
Number of extensions: 2314
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)