Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0189
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.34 
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    30   0.34 
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    28   1.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    28   1.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   1.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.1  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    27   3.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.5  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   5.5  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   7.3  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   9.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   9.6  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -3

Query: 235 SASDSHSRSMFTERCSFSASLSA-PSNLCAFLSLRMSTLSHSCFSSLPCWRMLAASSSGT 59
           S+S S S ++ +   S S+S S+ P++  + +S   S+ S S FSS       ++S S T
Sbjct: 312 SSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSST 371

Query: 58  VASRS 44
           V+S S
Sbjct: 372 VSSSS 376



 Score = 29.5 bits (63), Expect = 0.45
 Identities = 24/67 (35%), Positives = 33/67 (49%)
 Frame = -3

Query: 244 SLVSASDSHSRSMFTERCSFSASLSAPSNLCAFLSLRMSTLSHSCFSSLPCWRMLAASSS 65
           S +S+S S S S  +   + S+S S+ S+  + LS   S  S S FSS P       SSS
Sbjct: 288 STISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLS-SSSMSSSSSFSSSPTSSSSTISSS 346

Query: 64  GTVASRS 44
            +  S S
Sbjct: 347 SSSPSSS 353



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -3

Query: 244 SLVSASDSHSRSMFTERCSFSASLSAPSNLCAFLS-LRMSTLSHSCFSSLPCWRMLAASS 68
           S++S+S S S S  +   + S+S S+ S+  +  S +  S+ S S FSS      +++SS
Sbjct: 271 SIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSS 330

Query: 67  S 65
           S
Sbjct: 331 S 331


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -3

Query: 244 SLVSASDSHSRSMFTERCSFSASLSAPSNLCAFLSLRMSTLSHSCFSSLPCWRMLAASSS 65
           S+ S+ + H   +   + SF +++ A    CA ++ R + +S    SSL   R L   + 
Sbjct: 18  SVKSSDNDHKEELINNQKSFESNVEAFMEQCAHMNRRPAWISDLDNSSLEVVRHLGEGNG 77

Query: 64  GTVA 53
           G V+
Sbjct: 78  GAVS 81


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 516 QVSRLCMCASSLPPRCMAHCHTSSQRLCMMVIQC 415
           Q+  LC C  S+P R   HC     ++C + I+C
Sbjct: 293 QLPSLCAC-HSIPSRGGFHCPRCKAKVCTLPIEC 325


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = -3

Query: 235 SASDSHSRSMFTERCSFSASLSAPSNLCAFLSLRMSTLSHSCFSSLPCWRMLAASSSGTV 56
           S+S S S S  +   S S+S S+ S+  +  S   S+ S    SS       ++SSS + 
Sbjct: 169 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSS 228

Query: 55  ASRSRP 38
           +S SRP
Sbjct: 229 SSSSRP 234


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/73 (24%), Positives = 38/73 (52%)
 Frame = +3

Query: 30   TKTGRDLEATVPLEDAANIRQQGSELKQLWDSVLILSERKAHKLEGALKEAEKLHRSVNM 209
            T+ G + + ++ ++ A +   Q   L +  +   IL + + H+L+ +L+E    H+S+N 
Sbjct: 848  TQEGENYDTSLFVKTAFSFEIQPDVLDRYGNEYDILLKSE-HELDSSLEEMRNRHKSLNE 906

Query: 210  LLEWLSDAETKLR 248
                LSD+   L+
Sbjct: 907  HFIMLSDSMANLQ 919


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -3

Query: 250 KRSLVSASDSHSR---SMFTERCSFSASL--SAPSNLCAFLSLRMSTLSHSCFSSLPCWR 86
           ++SL S S +  +   S F  + SF   L  S PS  C + SL  S L H     L  W+
Sbjct: 602 RQSLFSPSSTKKKLSGSPFQPKRSFLRRLFSSEPSCKCVYASLVASELEHEILEVLRRWQ 661

Query: 85  ML 80
           +L
Sbjct: 662 LL 663


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 181  ASLSAPSNLCAFLSLRMSTLSHSCFSSLPCWRMLAASSSGTVASR 47
            ASL+ P NL  +L   M  L       +P  R  AA + G++  +
Sbjct: 1627 ASLTEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEK 1671


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 158 LVRFPLAEDEYTVPQLLQFAALLADVGGVFQW 63
           L+ F    D YT P ++ +   L D    F+W
Sbjct: 158 LISFTCNRDPYTAPSVITYVGNLNDCAFFFEW 189


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 202  TERCSFSASLSAPSNLCAFLSLRMSTLSHSCFS 104
            T +C+ S SLS   +LC   S   ST    C++
Sbjct: 1524 TYKCNLSISLSQIDDLCNGFSFTTSTFLQCCWA 1556


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 311 FVRELN-EKKQDKDETITLAHSILSKAHTDAVTVIKHWITII 433
           F+  L+ E K+D   T  L H +L  +    +++IK  IT+I
Sbjct: 192 FINYLDTEHKRDSLPTAVLCHLLLRLSTYQQISIIKRLITLI 233


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 368 HSILSKAHTDAVTVIKHWITIIQSRWDEVWQW 463
           + +L KA  +A  ++ HW  +    W+++ Q+
Sbjct: 24  YDLLYKASENACVIVVHWDKMSPDLWEDILQF 55


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 278 ETQQQIRDHERFVRELNEKKQDK 346
           +T + +   +RF RELN KK++K
Sbjct: 91  QTSKSVPRSQRFSRELNVKKENK 113


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 410 IKHWITIIQSRWDEVWQWAMQRGGKLDAHMQSLETWTSC 526
           ++ W+   Q +  + W+   +R  KL+AH   + TW  C
Sbjct: 322 LQQWVK--QKKVQDAWRTIAERE-KLNAHALEVGTWAFC 357


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +2

Query: 323 LNEKKQDKDETITLAHSILSKAHTDAVTVIKHWITIIQSRWDEVWQWAMQRGGKLDAHMQ 502
           L + K  K+   T  +++ + + T    V+KH+I +   R  E  + A +   +    ++
Sbjct: 62  LRKGKIAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDDLE 121

Query: 503 SLETWTSCSRSCCSGS-PDSRT 565
           + ET  S   S  SG    SRT
Sbjct: 122 ATETPESIMMSLVSGDLSKSRT 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,683
Number of Sequences: 5004
Number of extensions: 37037
Number of successful extensions: 183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)