Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0189
         (657 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   0.69 
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   2.1  
AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    25   2.8  
AY070234-1|AAL58538.1|  223|Anopheles gambiae glutathione S-tran...    23   6.4  
AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...    23   8.5  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +3

Query: 9    EQQMQSVTKTGRDLEATVPLEDAANIRQQGSELKQLWDSVLILSERKAHKLEGALKEAEK 188
            + Q+  + +   +LEAT+     A ++QQ  ELK++   V  L+++     E    +AE+
Sbjct: 783  QTQINYLQEQQGELEATIQ-RLTAKLKQQEMELKRMHMDVASLTQQMPRLKEQVDWQAER 841

Query: 189  LHRSVN-----MLLEWLSDAETKLRFSASSPKA 272
            + R+ +       LE    AE K  F +SS KA
Sbjct: 842  VARTHSDPEKVRALE-AKVAECKQAFDSSSTKA 873



 Score = 25.4 bits (53), Expect = 1.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 239 QASLLGQLPEGDEETQQQIRDHERFVRELNEKKQDKDET---ITLAHSILSKAHTDAVT 406
           +A L   L    +ET+  + + E+   EL E K+  DE+   +++A S L     D VT
Sbjct: 445 EAKLTANLATLKDETKVLLEEKEKLQTELIELKRAVDESKSALSIAESELKICQHDEVT 503


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 540  QQLLEHEVQVSRLCMCASSLPPRCMAHCH 454
            ++L +  ++V+ + + A+SLPP C    H
Sbjct: 1592 KELADLRLEVANIELIANSLPPGCFKRTH 1620


>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 305 ERFVRELNEKKQDKDETITLAHSILSKAHTDAV 403
           ERF   LNE  Q  DE     H +LS+   D +
Sbjct: 155 ERFCEHLNESLQSSDE--IEVHDLLSRYTIDVI 185


>AY070234-1|AAL58538.1|  223|Anopheles gambiae glutathione
           S-transferase E3 protein.
          Length = 223

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 332 KKQDKDETITLAHSILSKAHTDAVTVIKHWITIIQSRW--DEVWQW 463
           +K  KD+T+  A  ++ +A+ +A+   +  +   + RW  + V+ W
Sbjct: 77  QKYAKDDTLYPAKDLVKQANINALLHFESGVLFARLRWILEPVFYW 122


>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 118 GTVYSSSARGKRTSWRAHSKRRK 186
           G V  +  +G  + +RAH+K+RK
Sbjct: 2   GRVIRAQRKGAGSVFRAHTKKRK 24


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,225
Number of Sequences: 2352
Number of extensions: 10307
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)