Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0189
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family pr... 31 0.51
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 31 0.67
At4g18050.1 68417.m02686 ABC transporter family protein contains... 31 0.89
At3g06020.1 68416.m00687 expressed protein ; expression supporte... 31 0.89
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 31 0.89
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 30 1.2
At1g56080.1 68414.m06439 expressed protein 30 1.2
At4g15060.1 68417.m02314 F-box protein-related contains weak sim... 30 1.6
At4g11770.1 68417.m01876 kelch repeat-containing F-box family pr... 29 2.1
At3g06120.1 68416.m00703 basic helix-loop-helix (bHLH) family pr... 29 2.1
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 2.7
At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR ... 29 2.7
At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR... 29 3.6
At5g56560.1 68418.m07058 F-box family protein contains F-box dom... 28 4.8
At5g49000.1 68418.m06062 kelch repeat-containing F-box family pr... 28 4.8
At5g17910.1 68418.m02100 expressed protein 28 4.8
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu... 28 4.8
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 28 4.8
At2g18570.1 68415.m02163 UDP-glucoronosyl/UDP-glucosyl transfera... 28 4.8
At5g61340.1 68418.m07697 expressed protein 28 6.3
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ... 28 6.3
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 28 6.3
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 28 6.3
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 28 6.3
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 28 6.3
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 28 6.3
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 27 8.3
At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR... 27 8.3
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 27 8.3
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 27 8.3
At2g04970.1 68415.m00518 hypothetical protein similar to At2g152... 27 8.3
At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR... 27 8.3
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 27 8.3
>At3g24140.1 68416.m03031 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 Helix-loop-helix
DNA-binding domain
Length = 414
Score = 31.5 bits (68), Expect = 0.51
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 212 PGVAIGRGDQASLLGQLPEGDEETQQ--QIRDHERFVRELNEKKQDKDETITLAHSILSK 385
PG + RGDQAS++G E E +Q Q + ++ R L E +D T T + S ++
Sbjct: 222 PGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGETGRDMTTTTTSSSSPITT 281
Query: 386 AHTDAVTVI 412
A +I
Sbjct: 282 VANQAQPLI 290
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +2
Query: 272 DEETQQQIRDHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWITIIQSRWDE 451
DE T + ER V+E E TI +AH + + + D ++V+K+ + DE
Sbjct: 522 DEATSALDSESERVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDE 581
Query: 452 VWQWAMQRGGKLDAHMQSLE 511
+ + + L H+Q +E
Sbjct: 582 LMENIDGQYSTL-VHLQQIE 600
>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1281
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 272 DEETQQQIRDHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWITIIQSR--- 442
DE T + ER V++ ++ T+ +AH + + + D + V+K+ + + R
Sbjct: 1157 DEATSALDAESERVVQDALDRVMVNRTTVVVAHRLTTIKNADVIAVVKNGVIAEKGRHET 1216
Query: 443 WDEVWQWAM 469
DE ++W +
Sbjct: 1217 LDEDFRWCL 1225
>At3g06020.1 68416.m00687 expressed protein ; expression supported
by MPSS
Length = 300
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 266 EGDEETQQQIRDHERFVRELNEKKQDKDETI 358
E +EET + +RD+E + E E++++K+E I
Sbjct: 235 EEEEETIETVRDNEEEIPEYKEEEEEKEEEI 265
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 172 SAPSNLCAFLSLRMSTLSHSCFSSLPCWRMLAA 74
S+PSN+C L R S SH+ SS +R L A
Sbjct: 530 SSPSNICKVLQFRRSRFSHTPSSSSSRYRTLVA 562
>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
[Coptis japonica] GI:14715462, MDR-like p-glycoprotein
[Arabidopsis thaliana] GI:24324262; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1286
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 272 DEETQQQIRDHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWITIIQSRWD 448
DE T + ER V++ ++ TI +AH + + + D + V+K+ + + + + D
Sbjct: 1206 DEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIVEKGKHD 1264
>At1g56080.1 68414.m06439 expressed protein
Length = 310
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 314 VRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWIT 427
++ELN +KQ ++ET+ A I K + D K +T
Sbjct: 270 IKELNARKQGREETLQKAEEIFGKENNDLYISFKGLLT 307
>At4g15060.1 68417.m02314 F-box protein-related contains weak
similarity to F-box domain Pfam:PF00646
Length = 572
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 299 DHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWITIIQSRWDEVWQW 463
+ E ++EL +D D+ L +L K T I +I+ RW+ +W W
Sbjct: 156 ERETMIQELLLSFRDMDKISRLPDDLLVKVLLFLPTKIAVSTSILSKRWEFLWMW 210
>At4g11770.1 68417.m01876 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 396
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 84 IRQQGSELKQLWDSVLILSERKAHKLEGALK 176
+R GS+ K +W + + L R AHK+ G ++
Sbjct: 344 VRVVGSDKKMIWCTEIALERRSAHKIYGKIE 374
>At3g06120.1 68416.m00703 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 202
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 167 RTQRGGKAASLCEHAPGVAIGRGDQASLLGQLPEGDEETQQ--QIRDHERFVRELNEKKQ 340
R Q SL P I RGDQAS++G + E +E QQ Q+ + ++ + LN
Sbjct: 11 RRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKKRRKTLNRPSF 70
Query: 341 DKDETITLAHSILSKAHT 394
D T+ S L A T
Sbjct: 71 PYDHQ-TIEPSSLGAATT 87
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 6 REQQMQSVTKTGRD-LEATVPL-EDAANIRQQGSELKQLWDSVLILSERKAHKLEGALKE 179
R +Q + + + R+ EA L E+ +N R S+ Q ++ ++ E +L ALK
Sbjct: 837 RRKQEEHIKQLQREWAEAKKELQEERSNARDFTSDRNQTLNNAVMQVEEMGKELANALKA 896
Query: 180 AEKLHRSVNMLLEWLSDAETKLRFSASSPK 269
++ LSD E K+R +S PK
Sbjct: 897 VSVAESRASVAEARLSDLEKKIR--SSDPK 924
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +3
Query: 69 EDAANIRQQGSELKQLWDSVLILSERKAHKLEGALKEAEKLHRSVNMLL-------EWLS 227
ED A R + ++ D + + + KLEG +KE+E+ +N +L + +
Sbjct: 698 EDFAKARSEVIAIRSERDKLAMEANFAREKLEGIMKESERKREEMNSVLARNIEFSQLII 757
Query: 228 DAETKLRFSASS 263
D + KLR S+ S
Sbjct: 758 DHQRKLRESSES 769
>At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 907
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 105 LKQLWDSVLILSERKAHKLEGALKEAEKLHRSVNMLLEWLSDAETKLRFSA 257
+K+LWD L ++ + +G + L R +N+L +L DA+ K +A
Sbjct: 10 IKKLWD----LLSQECEQFQGVEDQVTGLKRDLNLLSSFLKDADAKKHTTA 56
>At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. False intron
created at intron 2 to escape a frameshift in the BAC
sequence.
Length = 1165
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 42 RDLEATVPLEDAANIRQQGSELKQLWDSVLILSERKAHKLEGA--LKEAEKLHRSVNMLL 215
R L ++ E+ ++ Q SEL++LW+ V L+ K LE + LKE L + N+
Sbjct: 601 RCLPSSFRPENLVKLKMQESELEKLWEGVGSLTCLKDMDLEKSKNLKEIPDLSMATNLKT 660
Query: 216 EWLSDAETKLRFSAS 260
L + ++ S+S
Sbjct: 661 LNLKYCSSLVKISSS 675
>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
Pfam:PF00646
Length = 607
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 187 FSASLSAPSNLCAFLSLRMSTLSHSCFSSLPCW 89
F +L P LC+ ++L+ TL C +P W
Sbjct: 115 FGKTLELPCCLCSCITLKELTLHDLCIKVVPAW 147
>At5g49000.1 68418.m06062 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 372
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 96 GSELKQLWDSVLILSERKAHKLEGALKEAEKL-HRSVNMLLEWLSDAET 239
G ++ LWD + S K+H + A+ E+ ++ + +EW D T
Sbjct: 309 GGKMALLWDKYIPCSGNKSHSISCAVVSLERCKNQGIRGKVEWFDDMLT 357
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Frame = +2
Query: 131 HPQREESAQVGGRTQ-RGGKAASLCEHAPGVAIGRGDQASLLGQLPEGDEETQQQIRDHE 307
HP A G G AAS H G EGD E + + D E
Sbjct: 274 HPLLLSEAPTRGIVDGEGSDAASEGPHRSSSDEGMESDGDSESHGEEGDNENEDEEEDEE 333
Query: 308 RF-VRELNEKKQDKDE 352
E EKK+DKD+
Sbjct: 334 EEDEEEKQEKKEDKDD 349
>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1229
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 272 DEETQQQIRDHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWITI 430
DE T + ER V++ ++ T+ +AH + + + D + V+K+ + +
Sbjct: 1149 DEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIV 1201
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 272 DEETQQQIRDHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWITI 430
DE T + ER V++ ++ T+ +AH + + + D + V+K+ + +
Sbjct: 1212 DEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIV 1264
>At2g18570.1 68415.m02163 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 470
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 170 TQRGGKAASLCEHAPGVAIGRGDQASLLGQLPEGDEETQQQIRDHERFVRELNEKKQDKD 349
T+ G A E IGR + ASL+ ++ ++E Q+IR VR +E+ KD
Sbjct: 393 TEEIGVAVRTSELPSERVIGREEVASLVRKIMAEEDEEGQKIRAKAEEVRVSSERAWSKD 452
>At5g61340.1 68418.m07697 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 259 LAEKRSLVSASDSHSRSMFTERCSFSASLSAPSNLCAFLSLRMSTLSHSCFSSLPCWRML 80
L+ S S+S + R + T C+F LSA ++ A L +TL FSS + L
Sbjct: 110 LSNNHSADSSSVFYLRLLKTYVCNFFFLLSANASAFALFFLAYNTLEAFGFSSRNFYTFL 169
Query: 79 AASSS 65
+ SS+
Sbjct: 170 SLSSA 174
>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 908
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 105 LKQLWDSVLILSERKAHKLEGALKEAEKLHRSVNMLLEWLSDAETK 242
L++LWD L R++ +L+G ++ + L R + L L DA+ K
Sbjct: 10 LEKLWD----LLSRESERLQGIDEQLDGLKRQLRSLQSLLKDADAK 51
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 272 DEETQQQIRDHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWI 424
DE T + ER V++ ++ TI +AH + + + D + V+K+ +
Sbjct: 1150 DEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGV 1200
>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
myosin heavy chain [Arabidopsis thaliana]
gi|602328|emb|CAA84067.
Length = 1242
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/87 (25%), Positives = 43/87 (49%)
Frame = +3
Query: 6 REQQMQSVTKTGRDLEATVPLEDAANIRQQGSELKQLWDSVLILSERKAHKLEGALKEAE 185
R+ +++S+T L+A + +E +Q+ ++ L ER+ +LE +
Sbjct: 1078 RDTEIESLTAEVEMLKALLQVE-----KQRADISERKCAEARELGERRRKRLEETERRVY 1132
Query: 186 KLHRSVNMLLEWLSDAETKLRFSASSP 266
+L S+N LL +SD ++L+ SP
Sbjct: 1133 QLQDSLNRLLYSMSDQFSQLKSILRSP 1159
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 251 EAKLGLRVR*PLQEHVHRAMQLFRLFECALQLVRFPLAEDEYTV 120
E +LG +V P+ EH+ R + +FEC +V L+++E V
Sbjct: 252 EPRLGKKVAEPICEHMRRTVAKSLVFECVRTVVS-SLSDNEAAV 294
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 251 EAKLGLRVR*PLQEHVHRAMQLFRLFECALQLVRFPLAEDEYTV 120
E +LG +V P+ EH+ R + +FEC +V L+++E V
Sbjct: 252 EPRLGKKVAEPICEHMRRTVAKSLVFECVRTVVS-SLSDNEAAV 294
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 272 DEETQQQIRDHERFVRELNEKKQDKDETITLAHSILSKAHTDAVTVIKHWI 424
DE T + ER V++ ++ TI +AH + + + D + V+K+ +
Sbjct: 1198 DEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGV 1248
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 164 GRTQ-RGGKAASLCEHAPGVAIGRGDQASLLGQLPEGDEETQQQIR 298
GR Q GGK + + A AIG A+L P G E Q+QIR
Sbjct: 884 GRQQVTGGKLREIQDEAKSFAIGNKPLAALFVHTPAG--ELQRQIR 927
>At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 986
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 42 RDLEATVPLEDAANIRQQGSELKQLWDSVLILSERKAHKLEGA--LKEAEKLHRSVNM 209
R L + LE + +GS L++LWD L+ K L + LK+ L + N+
Sbjct: 582 RSLSLKLNLEYLVELDMEGSLLEKLWDGTQPLANLKKMSLSSSWYLKKLPDLSNATNL 639
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 137 QREESAQVGGRTQRGGKAASLCEHAPGVAIGRGDQASLLGQLPEGDEETQQQ 292
+R++ + G +T+ GG ++ + P IGRG ++ + G +P QQQ
Sbjct: 2104 KRKDREKSGPKTRTGGSSSPVSP--PPAMIGRGLRSPVSGGVPRETRLAQQQ 2153
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 137 QREESAQVGGRTQRGGKAASLCEHAPGVAIGRGDQASLLGQLPEGDEETQQQ 292
+R++ + G +T+ GG ++ + P IGRG ++ + G +P QQQ
Sbjct: 2103 KRKDREKSGPKTRTGGSSSPVSP--PPAMIGRGLRSPVSGGVPRETRLAQQQ 2152
>At2g04970.1 68415.m00518 hypothetical protein similar to At2g15200,
At1g32830, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 808
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 230 RGDQASLLGQLP-EGDEETQQQIRDHERFVRELNEKKQDKDETI 358
RGD+ + ++P +GDEE + + E +E E+K K+E++
Sbjct: 532 RGDEGTEKQEIPKQGDEEMEGEEEKQEEEGKEEEEEKVLKEESV 575
>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 997
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 69 EDAANIRQQGSELKQLWDSVLILSERKAHKLEGA--LKEAEKLHRSVNM 209
E+ + + S L+ LW +L++ K LEG+ LKE L + N+
Sbjct: 601 ENLVELDMKDSRLEYLWPGTQLLTKLKKLNLEGSYNLKELPDLSNATNL 649
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 36 TGRDLEATVPLEDAANIRQQGSELKQLWDSVLILSERKAHKL--EGALKEAEKLHRSVNM 209
+G+ L ++ E+ + Q SEL++LW+ L+ K L L E L + N+
Sbjct: 590 SGKRLPSSFFAENLVEVNMQDSELQKLWEGTQCLANLKKIDLSRSSCLTELPDLSNATNL 649
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,451
Number of Sequences: 28952
Number of extensions: 229065
Number of successful extensions: 1079
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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