Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0187
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    29   5.2  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    28   9.1  

>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -1

Query: 297 RPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 133
           RPSG WC     G +   + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -2

Query: 800 RRLKLPRDPVRGHARRGV*LGRYICQRITQVS*GQLSE 687
           RR    R P RG ARRG  LGR      T V+  Q +E
Sbjct: 370 RRRPAGRRPFRGQARRGQRLGRKTVATHTPVTENQATE 407


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 336 REEPQFRTFGSCTRPSGRWCEATIRGISLNASKAEASLAESGKDMLTVE-PRES 178
           R EP +R F    RPSG WC     G     + AEA+    G  +  ++ P+E+
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTGFHAAKADAEAACQAVGATLSGLQNPQEA 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,017,633
Number of Sequences: 27780
Number of extensions: 400637
Number of successful extensions: 1094
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)