Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0187
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    30   2.1  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.7  
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ...    28   8.4  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   8.4  
At2g18250.1 68415.m02128 cytidylyltransferase domain-containing ...    28   8.4  

>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 288 GRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCD 157
           G W +  +   S   +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 695 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 582
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 812

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 678 VSVLAELALGHLRYSLTD-VPPQSNSPPGMSSN 773
           ++V A L L    YS  +  PP S++PPG S N
Sbjct: 330 LAVHAALRLSESEYSRQEPAPPPSSAPPGFSEN 362


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 308 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSNPAHVP 424
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At2g18250.1 68415.m02128 cytidylyltransferase domain-containing
           protein similar to CoA synthase [Mus musculus]
           GI:21780289, bifunctional phosphopantetheine adenylyl
           transferase / dephospho CoA kinase [Sus scrofa]
           GI:20465246; contains Pfam profile PF01467:
           Cytidylyltransferase
          Length = 176

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -1

Query: 261 GISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRS 88
           G+S+N  +AE  L++   +++ +    S G+K    T R   +++ ++++ P   + S
Sbjct: 119 GLSVNRKRAERGLSQLKIEVVEIVSDGSSGNKISSSTLRKMEAEKASKQKQPAEEKAS 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,192,510
Number of Sequences: 28952
Number of extensions: 386551
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)