Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0186
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.52 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.1  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    22   6.1  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   6.4  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   6.4  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   8.5  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   8.5  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 375 SGCGRCRVWSMFVRYVRFSE 434
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 246 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 118
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 154 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 17
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 421 FVLAS*YFNIMRPQKLYIFNMTLAKIVLRSD 513
           F + S ++  ++P  L + +M++A IVLR+D
Sbjct: 255 FPIQSTFYKDVKPFDLKLLHMSVASIVLRND 285


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 22.2 bits (45), Expect(2) = 6.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 468 QFLRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKP 361
           QF+  H  ++LTR  E     S  P T      S P
Sbjct: 38  QFINHHMQQLLTRPVEGTHSASVHPSTSSTSHISSP 73



 Score = 21.4 bits (43), Expect(2) = 6.1
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = -2

Query: 354 PRSSEPILIPKLRIQFADFPYLHYSID*RLFTLGPAADMGTNRRDISTY 208
           PRS        +  Q  + PY H S     F+ G  A +  N  +  T+
Sbjct: 109 PRSVSMQQSQDVHFQNTEIPYYHRSPSSDSFSPGVVASVNPNSNNSPTF 157


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 412 TNIDQTRHRPHPLPVQTRHAPV 347
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 579 TKPTRLTARKIRGRPENAGPDPVRT*DDFRECHIKYIQFLRPHYIKILTR*NEHNARTST 400
           +KP+R TA K + + ++ GP+  R    F       + F +   I I+ R   H+   + 
Sbjct: 354 SKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTG 413

Query: 399 RPGTGRIRFPS 367
           R G     FP+
Sbjct: 414 RIGYREGIFPA 424


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 13  RVFDGVTQSGLKTPPRGPGRV 75
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 13  RVFDGVTQSGLKTPPRGPGRV 75
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,806
Number of Sequences: 5004
Number of extensions: 54744
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)