Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0186
(601 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.0
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 22 4.0
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 5.3
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 5.3
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 5.3
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 5.3
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 5.3
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.3
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 5.3
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 9.2
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 9.2
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 9.2
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 9.2
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 9.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.2
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 374 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 472
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 374 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 472
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.2 bits (45), Expect = 4.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 67 PDLSAASSGHFGLPRRTLVFK 5
PDL+ S G GLP L +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -1
Query: 136 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 53
SE P+ HG R RQ+ + D +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 599 SCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
SC SR + +RH+ R +G R+ R +S
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 599 SCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
SC SR + +RH+ R +G R+ R +S
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 599 SCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
SC SR + +RH+ R +G R+ R +S
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 599 SCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
SC SR + +RH+ R +G R+ R +S
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 599 SCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
SC SR + +RH+ R +G R+ R +S
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 599 SCRSRTKRNRHDLRLGRSAEGRRTRVRIQS 510
SC SR + +RH+ R +G R+ R +S
Sbjct: 229 SCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 113 RIPWNSNAQAEKKTLPGPLG 54
+IPW+ N +A K G G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 9.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 597 VPIAHETKPTRLTARKIRGRPENAGPDPV 511
VPI TKP AR +G N G + V
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNV 320
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 9.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 597 VPIAHETKPTRLTARKIRGRPENAGPDPV 511
VPI TKP AR +G N G + V
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNV 320
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 9.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 597 VPIAHETKPTRLTARKIRGRPENAGPDPV 511
VPI TKP AR +G N G + V
Sbjct: 292 VPIDANTKPCTWAARPWQGYMTNNGVNNV 320
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 22 DGVTQSGLKTPPRGPG 69
DG L +PPR PG
Sbjct: 128 DGPPSVSLSSPPREPG 143
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 385 PHPLPVQTRHAPVLRANPYSEV 320
P PLP A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,960
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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