Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0185
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)             83   1e-16
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)                     29   4.1  
SB_13518| Best HMM Match : Ank (HMM E-Value=0)                         29   4.1  
SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  28   7.1  
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.4  
SB_34888| Best HMM Match : GHMP_kinases (HMM E-Value=0.72)             27   9.4  

>SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)
          Length = 489

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 36/63 (57%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
 Frame = +1

Query: 76  MALDRKGTFKVEYLQEIEKKVQERWESQKIFEVEAPD---DGKSHEKFLCTFPYPYMNGR 246
           M+++RK T KV++L+ IE  VQ++WE  KIFE++APD   D     KF CTFPYPYMNG+
Sbjct: 139 MSVERKSTAKVDFLKGIETDVQQQWEKMKIFEIDAPDPGSDAAKKGKFFCTFPYPYMNGK 198

Query: 247 LHL 255
           LHL
Sbjct: 199 LHL 201



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = +2

Query: 512 GGSKYQWQIMKSIGVPEEEIKEFANESYWLEYFPPRA 622
           G   YQWQIM+S+G+P+EEI +FA   YWL YFPP A
Sbjct: 250 GNVTYQWQIMQSLGIPQEEIPKFAETDYWLSYFPPLA 286



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/25 (68%), Positives = 19/25 (76%)
 Frame = +3

Query: 363 KACADKLKREMAVYGCPPVFPEDEE 437
           KACADKLKREM  +G PP FP  +E
Sbjct: 209 KACADKLKREMEQFGNPPRFPAVDE 233


>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
          Length = 1088

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 290  GKLTFG*RKCMTKCKRPFMYGYGKVH-KNFSCDFPSSGASTSKIF 159
            G +    +KC     +P + GY K H ++FS D    G ST+  F
Sbjct: 1031 GMIAAAEKKCTVCATKPLLQGYTKCHPQSFSIDRIDDGHSTTDEF 1075


>SB_13518| Best HMM Match : Ank (HMM E-Value=0)
          Length = 402

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 295 LQANSHLDRENV*PNASVHSCMDMEKYTKTSHVISHHQELQLQKSSGS 152
           LQ NSH+D  +     +VH C      T   H++ +  +L +    GS
Sbjct: 147 LQHNSHVDARSDKGLTAVHFCALSNSLTSLQHLMDYRADLGIPTERGS 194


>SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -3

Query: 384 LAYQHKL*SASQYSGIQMETAP---FYLSTGSTCRQTHIWIEKMYDQMQAS 241
           L ++  + +A    GI  E A    +  +T +T  +T +WI KMY  + AS
Sbjct: 411 LWFKQNICTADMKYGIDAEPAARDAYVKATDNTVTETGLWINKMYPHLGAS 461


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 115 LQEIEKKVQERWESQKIFEVEAPDD 189
           +++  K+V + W+ +K+FEVE  DD
Sbjct: 97  IKDAVKRVLQIWQDRKVFEVEFIDD 121


>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 286 NSHLDRENV*PNASVHSCMDMEKYTKTSHVISHHQELQLQKSSGS 152
           NSHL  +      + H C   +K   +S  +S H+ + LQK   +
Sbjct: 409 NSHLGVKTDIKGENAHVCDICKKMLASSSALSRHKRIHLQKKQST 453


>SB_34888| Best HMM Match : GHMP_kinases (HMM E-Value=0.72)
          Length = 258

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 115 LQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPY---PYMNGRLHLVIHFL 270
           ++ I K ++ER +     E+   D  + H     T+P    PYMN   HLV+  +
Sbjct: 148 MENITKAIKER-DFHTFAEITMKDSNQLHAVCQDTYPPITPPYMNSTSHLVVQLV 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,818,998
Number of Sequences: 59808
Number of extensions: 383861
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)