Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0185
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p... 109 1e-24
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p... 109 1e-24
Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical pr... 32 0.38
AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA s... 32 0.38
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 28 6.2
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ... 28 6.2
>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 109 bits (263), Expect = 1e-24
Identities = 50/70 (71%), Positives = 55/70 (78%)
Frame = +3
Query: 246 LAFGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFP 425
L GHTFS SKCEFA + RL+G+ VLFPFGFHCTGMPIKACADKLKREM +G PP FP
Sbjct: 56 LHLGHTFSASKCEFAAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNFP 115
Query: 426 EDEELIVKDE 455
ED VK+E
Sbjct: 116 EDVVEEVKEE 125
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/65 (58%), Positives = 43/65 (66%)
Frame = +1
Query: 103 KVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLVIHFLYPNV 282
KV LQEIEK +QE WES+K FE +A DDGK K+L TFP+PYMNGRLHL F
Sbjct: 10 KVAQLQEIEKSIQELWESKKAFEADARDDGK--PKYLVTFPFPYMNGRLHLGHTFSASKC 67
Query: 283 SLPAG 297
AG
Sbjct: 68 EFAAG 72
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2
Query: 512 GGSKYQWQIMKSIGVPEEEIKEFANESYWLEYFPP 616
G +KYQWQIMKS+G+ +EEIKEF++ ++WL YFPP
Sbjct: 149 GNAKYQWQIMKSLGLCDEEIKEFSDPNHWLYYFPP 183
>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
protein R74.1 protein.
Length = 1186
Score = 109 bits (263), Expect = 1e-24
Identities = 50/70 (71%), Positives = 55/70 (78%)
Frame = +3
Query: 246 LAFGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKREMAVYGCPPVFP 425
L GHTFS SKCEFA + RL+G+ VLFPFGFHCTGMPIKACADKLKREM +G PP FP
Sbjct: 56 LHLGHTFSASKCEFAAGFQRLQGKEVLFPFGFHCTGMPIKACADKLKREMQDFGYPPNFP 115
Query: 426 EDEELIVKDE 455
ED VK+E
Sbjct: 116 EDVVEEVKEE 125
Score = 76.6 bits (180), Expect = 1e-14
Identities = 38/65 (58%), Positives = 43/65 (66%)
Frame = +1
Query: 103 KVEYLQEIEKKVQERWESQKIFEVEAPDDGKSHEKFLCTFPYPYMNGRLHLVIHFLYPNV 282
KV LQEIEK +QE WES+K FE +A DDGK K+L TFP+PYMNGRLHL F
Sbjct: 10 KVAQLQEIEKSIQELWESKKAFEADARDDGK--PKYLVTFPFPYMNGRLHLGHTFSASKC 67
Query: 283 SLPAG 297
AG
Sbjct: 68 EFAAG 72
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2
Query: 512 GGSKYQWQIMKSIGVPEEEIKEFANESYWLEYFPP 616
G +KYQWQIMKS+G+ +EEIKEF++ ++WL YFPP
Sbjct: 149 GNAKYQWQIMKSLGLCDEEIKEFSDPNHWLYYFPP 183
>Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical
protein ZK524.3b protein.
Length = 828
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 246 LAFGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIK-ACADK 380
L GH + + RYYRL G V+ P G+ G+P + A DK
Sbjct: 41 LHIGHMRVYTISDATARYYRLNGYEVIHPIGWDSFGLPAENAARDK 86
>Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical
protein ZK524.3a protein.
Length = 859
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 246 LAFGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIK-ACADK 380
L GH + + RYYRL G V+ P G+ G+P + A DK
Sbjct: 72 LHIGHMRVYTISDATARYYRLNGYEVIHPIGWDSFGLPAENAARDK 117
>AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA
synthetase (mitochondrial)protein.
Length = 828
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 246 LAFGHTFSLSKCEFACRYYRLKGRMVLFPFGFHCTGMPIK-ACADK 380
L GH + + RYYRL G V+ P G+ G+P + A DK
Sbjct: 41 LHIGHMRVYTISDATARYYRLNGYEVIHPIGWDSFGLPAENAARDK 86
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 276 KCEFACRYYRLKGRMVLFPFGFHCTGMPIKACADKLKRE 392
+ +F RYY G V +P+G HC P + + K E
Sbjct: 40 RSQFVLRYYLRNGECVSYPYG-HCATDPTEPNLYRYKEE 77
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 303 GSTCRQTHIWIEKMYDQMQASIHVWIWKSTQKLLM 199
GS C +T ++EK D + S+ + I +ST +LL+
Sbjct: 610 GSVCYETKHFVEKNDDLLHNSLQILIEQSTIRLLV 644
>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform b protein.
Length = 1144
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 303 GSTCRQTHIWIEKMYDQMQASIHVWIWKSTQKLLM 199
GS C +T ++EK D + S+ + I +ST +LL+
Sbjct: 610 GSVCYETKHFVEKNDDLLHNSLQILIEQSTIRLLV 644
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,059
Number of Sequences: 27780
Number of extensions: 315615
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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