Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0185
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.45 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 181 PDDGKSHEKFLCTFPYPYMNGRLHLVIHFLYPNVSLPAGTTG*KVEW 321
           P+  K  + F  T+ Y    G+ H ++  L  ++ L  GTT  ++ W
Sbjct: 248 PEAAKMAKAFTYTYNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMW 294


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 498 LCFSCLYFCLWV*YLH 451
           +CF C     W+ YLH
Sbjct: 414 VCFVCFNLMYWIIYLH 429


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 498 LCFSCLYFCLWV*YLH 451
           +CF C     W+ YLH
Sbjct: 414 VCFVCFNLMYWIIYLH 429


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 210 FVYFSISIHEWTLAFGHTFSLSKC 281
           F YF  +   W  A  H  SL KC
Sbjct: 538 FCYFRRNAATWKNAVRHNLSLHKC 561


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 466 PK-TKVKARKAKP*PNW-WFKV 525
           PK +K K+ K +P PNW W  V
Sbjct: 218 PKHSKTKSPKLRPYPNWEWHTV 239


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 601 KPVAFIGKLFDLLFRNTNTLH 539
           KPV F G   DL+    +T H
Sbjct: 38  KPVPFFGTTKDLILVKKSTAH 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,873
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)