Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0184
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   31   0.89 
SB_25728| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 552 FLTFFAIPFIFNQT*IVYFTWNVYRTFFVFLVFYTIFLYFCFCSAFL 692
           F  FFA  F   +   V F + VY  FF+F+VF  +   F F  AF+
Sbjct: 667 FSFFFAFAFRRLRLDSVVFAFVVYPYFFLFVVFAFVVFIFIFFFAFV 713


>SB_25728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 299 LSTLVSKF*TWK*ISPVSIFLWNVFI-RF*YERTRSLY*FLV 421
           LS L++ F +WK  +P +  L  VF+ +  YER R++  +L+
Sbjct: 131 LSKLITDFVSWKEATPYAAILSGVFLFQCKYERNRAVLNYLM 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,467,703
Number of Sequences: 59808
Number of extensions: 278638
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)