Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0183
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.3  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   3.1  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   7.2  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 97  WNVYRTFFVFLVFYTIFLYFCF 32
           W VY T+F     + IFLYF F
Sbjct: 888 WKVYWTYFKACSLFLIFLYFLF 909


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 748 RCFDAFNRLRYYVCKIEMLPWLILDAT---FSLQSGKHSCENNSGFIFHLISPVRYALTH 578
           +C DAF+    +   + +   +++      F  Q    +CE  +G IF  ++P +  L H
Sbjct: 258 KCLDAFDLRSAFSTYLSLNQPMVVSVILPIFKRQLVAFACEGMAGLIFAKVTPEKRLLFH 317

Query: 577 SNL 569
           S L
Sbjct: 318 SAL 320


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 413 LYSITPFGVSVFVILFTSSNHSSYSKLYDALTIL 514
           L ++ P+G S+  I   SS+HSSYS  Y    IL
Sbjct: 363 LETVIPYG-SLRSIFEDSSSHSSYSPYYVVFDIL 395


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = -3

Query: 784 KIARAKMRLWMIRCFDAFNRLRYYVCKIEMLPWLILDATFSLQSGKHSCENNSGFIFHLI 605
           ++ + K  LWM        R +Y     +        A FS   G++ C N   +I HL 
Sbjct: 109 RLFKEKSALWMYNFHGKSLRNQYKELYKDWQGSPFFFALFSNAFGENQCRN---WIQHLA 165

Query: 604 S----PVRYALTHSNLV 566
                PVRYA   SNL+
Sbjct: 166 PFDYLPVRYANVQSNLI 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,027
Number of Sequences: 5004
Number of extensions: 51599
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)