Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0183
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z70308-11|CAA94343.4|  378|Caenorhabditis elegans Hypothetical p...    30   2.2  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    28   6.7  

>Z79597-1|CAB01861.1|  271|Caenorhabditis elegans Hypothetical
           protein C33A11.2 protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 85  RTFFVFLVFYTIFLYFCFCSAF 20
           RT F + V +TIF   CFC +F
Sbjct: 157 RTVFYYRVIFTIFSVICFCCSF 178


>Z70308-11|CAA94343.4|  378|Caenorhabditis elegans Hypothetical
           protein F49E11.2 protein.
          Length = 378

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -3

Query: 796 LMLVKIARAKMRLWMIRCFDAFNRLRYYVCKIEMLPWLILDATFSLQSGK 647
           L L  IA   + LW +R    F+ +  ++ +I +LPWL LD   +L S +
Sbjct: 298 LRLETIAGGAVLLWCVRII--FDVVIAFLSEIRLLPWLRLDNLQTLDSSR 345


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 121 QT*IVYFTWNVYRTFFVFLVFYTIFLYF 38
           Q  ++Y  +NVY TFFV       FL F
Sbjct: 176 QNYVIYRDYNVYMTFFVIFKMVATFLVF 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,757
Number of Sequences: 27780
Number of extensions: 284000
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)