Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0180
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 32 0.059
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 29 0.55
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.9
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 5.1
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.1
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 6.8
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 6.8
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 6.8
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 6.8
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 9.0
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.0
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 9.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 9.0
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 25 9.0
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 32.3 bits (70), Expect = 0.059
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 440 SGCGRCRVWSMFVRYVRFSELVFNIMRPQKLYIF 541
+GCG+ VW +VR+V F E LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 29.1 bits (62), Expect = 0.55
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 623 ARKIRGRPENAGPDPVRNVRRFSRV 549
AR I GRPEN G ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 167 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 292
P+ P+EG Y + ++ HRI R A LE ++R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -1
Query: 280 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 149
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 219 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 82
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 477 TNIDQTRHRPHPLPVQTRHAPV 412
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 365 FPYLHYSID*RLFTLETCCGYGYEPARHL 279
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 266 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 105
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = -2
Query: 447 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 283
HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313
Query: 282 -SPRTSLT*ISRSAESIRTP 226
SP+ + I + +SI TP
Sbjct: 314 VSPKYT---IQQYVQSIGTP 330
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 78 RVFDGVTQSGLKTPPRGPGRV 140
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 14 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 172
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -1
Query: 379 SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPDTAANAVLFAF 200
S TSL+ R S+P R D G+++ +TYIPH K ++ +A
Sbjct: 212 SEKDTSLSRRSSRGRSSAPKR-RKDSGSSKTT-ATYIPHNPSKKSSQHLPLLPDASFELE 269
Query: 199 RTISPFYRIP 170
R++S Y+ P
Sbjct: 270 RSVSRSYQSP 279
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 78 RVFDGVTQSGLKTPPRGPGRV 140
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 266 SPEFQGPQRVSGHRRKCGALR 204
SPEF G RV+ HR G L+
Sbjct: 60 SPEFSGMSRVARHRLVYGLLK 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,155
Number of Sequences: 5004
Number of extensions: 57914
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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