Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0177
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.44 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    28   1.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.3  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   2.3  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.1  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   7.1  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   7.1  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   7.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   9.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   9.4  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    25   9.4  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    25   9.4  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 372 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNGDHRPS 247
           + +K I L++NN+   KILN  R    V+ VGT  NG +  S
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNGANSSS 295


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 645 EEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 535
           + +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 139 KRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 387 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 271
           K SPKV+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 808

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
 Frame = +2

Query: 242  DSEGLWSPFGLVPTPNTKYWLRSVFKILK*TLLFSHRAMNFQLTFGLVLSLPSPKKSAIV 421
            D   LWSP+G+        +  +     +  +  +   +     +   ++ P P ++  +
Sbjct: 693  DENELWSPYGIRSLSMNDVYFGTGENYWRGPIWINMNYLILSSLYQNYINTPGPNQN--L 750

Query: 422  AVNIITQRQSETVALVH---KLNGVFGEDKSESTGKQSRTMSLEPWS 553
            A +I  + ++  V  V    +  G+F E    +TGK  RT     W+
Sbjct: 751  ARSIYEELRTNVVNNVFENWRQTGIFWEQYDPTTGKGQRTKDFTGWT 797


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 639 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 547
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 289 YQILVTLSVQDLEVDLVVLPQSNELPADF 375
           +Q+ V  ++QDL+  L   PQ N L  +F
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/67 (20%), Positives = 27/67 (40%)
 Frame = -1

Query: 648 YEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVDSDLSSPKTPLSLC 469
           YE+K    I++  + L+     NC +     + + S  +         ++ S + P S  
Sbjct: 317 YEKKNLYYISSAFSNLLHCRYFNCNDRLRSFYYRFSSWLFHQTLACAKEVESERAPTSYL 376

Query: 468 TSATVSL 448
           TS   S+
Sbjct: 377 TSCLPSI 383


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 438 VMMFTATMADFFGDGKDKTSPKVSWKFIALWENNKVYFKIL 316
           ++++   M  + G G D    K SW+   LW   K+Y K+L
Sbjct: 288 LLVYLLLMEGYNGYGFDARKRK-SWETYPLWVQVKLYEKVL 327


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 645  EEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVDSDLSS 493
            E ++  VI +  + L+++  MNC +YA Q W      + RDC  + S +S+
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYA-QSW------VCRDCGSIISIMST 1154


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 206 QVPLGSETIDAVDSEGLWS-PFGLVPTPNTKY 298
           Q PLGSE++D   SE + + P   VP  +++Y
Sbjct: 294 QAPLGSESVDTQASENVTTKPEPPVPFTSSEY 325


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 130 RTLETSGNRMAWGYNGRVIGSPEHYAWGVKAF 35
           +TL   G+   +GY   +   P HY + +  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 274 STDSQYQILVTLSV-QDLEVDLVVLPQSNELPADFRACFVLTVAEEVCHRCREHHY 438
           S++SQ Q+ +     QDL+V L+ L     L  D     +     E+C+RC++H +
Sbjct: 219 SSESQMQLKIFRQAKQDLDV-LIQLIVDEALNDD-----IFKSIAEICYRCQKHEF 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,615
Number of Sequences: 5004
Number of extensions: 51552
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)