Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0177
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0336 - 7397745-7398308,7398813-7400723                           32   0.34 
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213...    30   1.4  
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672...    29   3.2  
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    28   5.6  
07_01_0622 - 4625246-4627759                                           27   9.7  

>09_02_0336 - 7397745-7398308,7398813-7400723
          Length = 824

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -1

Query: 558 LWLQGSKDIVRDCFPVDSDLSSPKTPLSLCTSATVSL*R*VMMFTATMADFFGDGKDKTS 379
           LW++  K  +     V S  S PKTP  L T    SL    +  + T A  F     K  
Sbjct: 359 LWMEALKTAIHILNRVPSK-SVPKTPYELWTGRVPSLTHLRVWGSPTEAKVFNSNIGKLD 417

Query: 378 PK-VSWKFIALWENNKVY 328
           PK VS  FI+  E +K Y
Sbjct: 418 PKTVSCHFISYPERSKGY 435


>05_07_0076 -
           27520152-27520379,27520785-27521096,27521194-27521333,
           27521893-27521956,27522071-27522277,27522350-27522493,
           27522578-27522709,27522880-27524294,27524647-27524920,
           27526096-27526129,27527028-27527059
          Length = 993

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 271 VSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFV-----LTVAEEVCHRCREHH 435
           V+ DSQYQI+ T  +Q    D+    Q+ EL   F    +     +T   +V   C +HH
Sbjct: 678 VNADSQYQIVTTAELQPSAEDISEEKQTMELITQFEKPTLASENAMTKGFDVVTDCSDHH 737

Query: 436 Y 438
           +
Sbjct: 738 F 738


>03_02_0803 +
           11365959-11366390,11366470-11366502,11367158-11367214,
           11367784-11367945,11367987-11368139,11368218-11368295,
           11368377-11368469,11368981-11369071,11369091-11369209
          Length = 405

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 373 FRACFVLTVAEEVCHRC 423
           F+ CF+L V E++CH C
Sbjct: 205 FKVCFILLVMEKMCHVC 221


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 375 KVSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNGDHRPSESTASIVSEPSGTCSP 199
           +V WK   L      +FK+ +     + VLG+G NP+ D   SE   + V + +G   P
Sbjct: 562 RVLWKLGTLPHGLLTFFKLTHPLDKSWHVLGLGYNPSIDR--SEIDNAAVVDYNGNMKP 618


>07_01_0622 - 4625246-4627759
          Length = 837

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 72  PITLPLYPQAMRLPEVSSVLDSVKALLY 155
           P+TLPLYPQ+M   + S+  D  +A L+
Sbjct: 398 PVTLPLYPQSME--DASTQSDCEEACLH 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,815,584
Number of Sequences: 37544
Number of extensions: 337183
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)