Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0177
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_43188| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_45400| Best HMM Match : MAM (HMM E-Value=0)                         27   9.9  
SB_38364| Best HMM Match : zf-NPL4 (HMM E-Value=4.1)                   27   9.9  
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)                   27   9.9  

>SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -3

Query: 286  GSRY*PERRPQAFGVNSVD-SFRAQWYLQPAKYDKDNLFYI-YNREYSKALTLSRTLETS 113
            G  Y    R  A G  SV+ SFR  WYL   KY + + F    + E    L    T  TS
Sbjct: 805  GRGYDERNRIIAGGPMSVEMSFRDLWYLNVLKYRQTSYFTTKIHVEEDSFLDFDFT-RTS 863

Query: 112  GNRMAWGYN-GRVIGSPE 62
              R + G N  +V+G+P+
Sbjct: 864  RARNSHGLNIKKVLGAPQ 881


>SB_43188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 420 TMADFFGDGKDKTSPKVSWKFIALWENNKV 331
           TMAD F  G + T+  + W F+ +  N +V
Sbjct: 136 TMADAFSGGLETTTSNLRWFFVYMMSNPEV 165


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 606 KLIRNNKMNCMEYAYQLWLQGSKDIVRDCF 517
           +L  NN+M    +A+  WL+G +   R C+
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
          Length = 257

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 348 WENNKVYFKILNTERNQYLVLGVGTNPNGDHRPSESTASIVSEPSGTCSP 199
           W N++      N ER Q      GT P GDH  S +   I +E SG   P
Sbjct: 15  WTNSESNPPHYNWERKQGTTPSGGTGPQGDH-TSGTGHYIFTESSGPNGP 63


>SB_38364| Best HMM Match : zf-NPL4 (HMM E-Value=4.1)
          Length = 145

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 271 VSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEEVCHRCREHHYSASK 450
           V T+  Y++           D+V   Q  E+  D     V+ + +  C +C EH YS  K
Sbjct: 86  VFTEDSYRVEKVTPCAHGHHDIVQAQQPTEIHFDDG---VVIIQDRYCRKCGEHFYSEPK 142

Query: 451 RD 456
           ++
Sbjct: 143 QE 144


>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
          Length = 322

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -1

Query: 639 KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVRD 523
           KK +   ++V  L + NK N +E         Q  LQGSKDIVR+
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVRN 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,629,698
Number of Sequences: 59808
Number of extensions: 402334
Number of successful extensions: 1283
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)