Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0177
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    29   3.8  
AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 336 KVYFKILNTERNQYLVLGVGTNPNGDHR 253
           + YF++L+ E N+Y+++    N +G HR
Sbjct: 156 RAYFRVLSAEDNKYILIACHANLHGLHR 183


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 627 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVDSD 502
           ++  V+++L  N K+ C ++  QL       IVR+C+ + S+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN 298


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 627 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVDSD 502
           ++  V+++L  N K+ C ++  QL       IVR+C+ + S+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN 298


>AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical
           protein W05F2.4b protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 280 DSQYQILV---TLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEEVCHRCREHH 435
           +S Y++      LS+  L  +L +  ++   PAD R  F  +      H+ ++HH
Sbjct: 356 NSSYEVAAKDPVLSIDQLVAELELNTENTFSPADKRRSFPTSFGRPQAHQAQQHH 410


>AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical
           protein W05F2.4a protein.
          Length = 834

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 280 DSQYQILV---TLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEEVCHRCREHH 435
           +S Y++      LS+  L  +L +  ++   PAD R  F  +      H+ ++HH
Sbjct: 384 NSSYEVAAKDPVLSIDQLVAELELNTENTFSPADKRRSFPTSFGRPQAHQAQQHH 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,763
Number of Sequences: 27780
Number of extensions: 291298
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)