Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0177
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    26   0.27 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 332 TLLFSHRAMNFQLTFGLVLSLPSPKKSAIVAVNIITQRQSETV 460
           TL   HR +      G+V SL   K + IV +N   +R+SE V
Sbjct: 296 TLNLHHRGVRGTRVPGIVRSLVLDKLARIVLLNFQEERRSEPV 338


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 606 KLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVDSDLSSPKTPLSLCTSA 460
           KL + ++M   E A++ W   +  +  + F +D D +  +  LSL + A
Sbjct: 640 KLAQGDEMCGQEQAFRKWAADTFAVACETFCLDDDDTLLEVALSLGSEA 688


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 178 NCLCRI*RAAGTTGL 222
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 178 NCLCRI*RAAGTTGL 222
           NCL +I +A G TGL
Sbjct: 161 NCLTKIFKADGITGL 175


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 333 VYFKILNTERNQYLVLGVGTNPNGDHRP 250
           V F+I+N   N+ ++     NP+ D  P
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTP 425


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 46  HPKRNVRDFRSLYHCIPRPCG 108
           H KR + D    Y+ + RP G
Sbjct: 23  HEKRLLNDLLDTYNVLERPVG 43


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 333 VYFKILNTERNQYLVLGVGTNPNGDHRP 250
           V F+I+N   N+ ++     NP+ D  P
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTP 425


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 333 VYFKILNTERNQYLVLGVGTNPNGDHRP 250
           V F+I+N   N+ ++     NP+ D  P
Sbjct: 398 VNFRIMNANVNELILNTRCENPDNDRTP 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,634
Number of Sequences: 438
Number of extensions: 3616
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)