Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0177
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63450.1 68418.m07965 cytochrome P450, putative                     31   0.66 
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    30   1.2  
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    29   2.0  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    29   2.7  
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15...    29   2.7  
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15...    29   2.7  
At3g19690.1 68416.m02494 pathogenesis-related protein, putative ...    29   3.5  
At2g42000.1 68415.m05195 plant EC metallothionein-like family 15...    27   8.1  

>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 420 TMADFFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 277
           ++  F   G+D TS  ++W F  L +N+ V  KIL+  RN+   LG+G
Sbjct: 298 SVISFIMAGRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 408 FFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 277
           F   G+D TS  ++W F  L EN+ V  KIL  E +  + LG+G
Sbjct: 300 FIMAGRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 259 PQAFGVNSVDSFRAQWYLQPAKYDKDNLFYIY 164
           P+ F +NS+++FR +WY    + D+D L  I+
Sbjct: 358 PKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 284 PNTKYWLRSVFKILK*TLLFSHRAMNFQLTFGLVLS 391
           PNT+Y L+ V + +K + LF H A    +T+G++ S
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYGILSS 840


>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 84

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 85  HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 177
           HC   PC  P+ Q   T +K C C  GC C T
Sbjct: 51  HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 81


>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 85

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 85  HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 177
           HC   PC  P+ Q   T +K C C  GC C T
Sbjct: 52  HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 82


>At3g19690.1 68416.m02494 pathogenesis-related protein, putative
           similar to PR-1a protein GI:19944 GB:X06930 from
           [Nicotiana tabacum]; contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 161

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +2

Query: 413 AIVAVNIITQRQSETVALVHKLNGVFGEDKSESTGKQSRTMSLEPW 550
           A  A +   QR ++  ALVH  NG FGE+ + S+G+ S   + E W
Sbjct: 52  AAYAASYANQRINDC-ALVHS-NGPFGENIAMSSGEMSAEDAAEMW 95


>At2g42000.1 68415.m05195 plant EC metallothionein-like family 15
           protein 84 C-terminal residues identical to EC protein
           homolog 1 (SP:P93746) {Arabidopsis thaliana}; contains
           Pfam PF02068: Plant PEC family metallothionein profile;
          Length = 115

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 85  HCIPRPCGYPRFQAS*TVSKPC-CIHGCRC 171
           HC   PC  P+ Q   T +K C C  GC C
Sbjct: 82  HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTC 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,620,690
Number of Sequences: 28952
Number of extensions: 275241
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)