Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0174
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    44   2e-05
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   4.6  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   8.1  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   8.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   8.1  

>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 33/57 (57%)
 Frame = +3

Query: 306 QTMPKTKHGISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGGGYYDKFIT 476
           +++   K GI++   +  +    ET   +LII PGVAF     RLGHG GYYD +I+
Sbjct: 95  ESLTINKWGIAEPNGESRKIMDDETD-CELIIVPGVAFDEKLSRLGHGKGYYDNYIS 150


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 612 SYSIYSANITSSTFWSCSLVGTSSTT*QLKATATISE 502
           S  + S N TS+TF S + + TSS++    +T+  SE
Sbjct: 638 SIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASE 674


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 401  SSRGGVFSFRRQAGTRRWILRQVHH*FEAQSRNSSEIVAVAFNCQVVDEVPTNEQDQKVD 580
            +SR GV S  R    +R + R+       +    SE+ A   N +V++    +EQ Q +D
Sbjct: 1229 ASREGVLSTPRSTRKKRKLGRKSQSSNVNKEVAISEVSATLENVEVIERHGISEQGQNLD 1288

Query: 581  E 583
            E
Sbjct: 1289 E 1289


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 130 VINHSWYKSSSRIALYMSTENEIDTAPLIKHIQAR 234
           +I  +W  S+  ++LY ++ N  DTAP  K IQAR
Sbjct: 111 IILGTW-ASTMGLSLYAASRNRYDTAPQ-KLIQAR 143


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 504 PK*LQWLLT-VKLSTRCRLTNKTRKWTRLYSLNKYCSYTET*RNRTQRMFGVPTILCTII 680
           P  LQW+   ++ STR R     + W + Y   K C  T    ++   + G+   +C  +
Sbjct: 6   PLFLQWIQEWMEESTR-RFPKSYQTWRKAYDSMKSCPITFHRPSQALALKGIGPTICAKL 64

Query: 681 FKKY 692
            KK+
Sbjct: 65  EKKW 68


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 22  IKPNPAKALLRNEIAAKIAALTNEEKK 102
           I  + AKA+L+N++  K A +T +E +
Sbjct: 66  ITVDAAKAILKNDVGIKCATITPDEAR 92


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 681 RLSYKESLALRTFFGCDFFMFLYSYSIYSANITSSTFWSCS 559
           RL +   L +    GC F + + SYS+ + +    +F SC+
Sbjct: 347 RLLHAGDLDVSKLIGCFFAVLIASYSLANISPKMQSFVSCA 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,226
Number of Sequences: 5004
Number of extensions: 68362
Number of successful extensions: 186
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)