Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0174
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1025 + 23365590-23365698,23366288-23366425,23366491-233666... 48 7e-06
07_03_0523 + 19030078-19031109 30 1.6
07_03_0132 - 14011468-14012124 29 2.8
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 29 2.8
03_02_0685 + 10401281-10401463,10403296-10403700 29 2.8
02_03_0038 - 14220885-14221000,14221120-14221198,14221538-142216... 29 2.8
10_07_0019 + 11931519-11932310 29 4.8
09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189 28 6.4
01_01_1103 - 8744873-8745724 28 6.4
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179... 28 8.4
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 28 8.4
>07_03_1025 +
23365590-23365698,23366288-23366425,23366491-23366649,
23366768-23366809,23366885-23366930,23367027-23367147
Length = 204
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 40 KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPL 213
K LR+E+ + ALT E++ + Q + ++N SW+K S R+ Y+S E+DT+ +
Sbjct: 14 KRALRSEVRRALRALTPEQRASEDQAIQNAILNSSWFKESKRLCAYISCAQLREVDTSKV 73
Query: 214 IKHI 225
+ +
Sbjct: 74 LSEV 77
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 249 RAQYAGGRMRMLHLETGDEQTMPKTKHGISQ----HGKDQARDDALETGG-LDLIIAPGV 413
R + MRML + T D+ + K I + AR++ L T +DL + PG
Sbjct: 94 RVEDKNRNMRMLKITTMDD--LVKNSMNILEPSPLDASGNAREEVLSTSSPVDLFLLPGQ 151
Query: 414 AFSRSGDRLGHGGG 455
AF R+G RLG GGG
Sbjct: 152 AFDRTGRRLGRGGG 165
>07_03_0523 + 19030078-19031109
Length = 343
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 330 GISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGG 452
G+ + G+DQA D GG+ +++ G R G +G G
Sbjct: 208 GMEERGQDQAADMKASGGGVGVVVRAGDYLHRYGSAVGMSG 248
>07_03_0132 - 14011468-14012124
Length = 218
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 327 HGISQHGKDQARDDALETGGLDLII-APGVAFSRSGDRLGHGGG 455
HG + G ++ARD G I + GVAF G R HG G
Sbjct: 121 HGREEDGGERARDHGRSREGAKTIERSEGVAFYSGGKRAEHGRG 164
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 7 GRMSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMST 186
G + KP A A L++ A A E+K+ +IV ++ SW + R+A+ +
Sbjct: 243 GGVEGAKPPDAHAFLQH--VATFAVAEKEDKELYRRIV----VSFSWRRQMPRLAITLGL 296
Query: 187 ENEID 201
E+E+D
Sbjct: 297 EDEMD 301
>03_02_0685 + 10401281-10401463,10403296-10403700
Length = 195
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 10 RMSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSS---RIALYM 180
R+ + LLRN++ A +A L ++ S +Y V WY+ R LYM
Sbjct: 26 RLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYM 85
Query: 181 STENE 195
N+
Sbjct: 86 LARNK 90
>02_03_0038 -
14220885-14221000,14221120-14221198,14221538-14221641,
14221869-14222049,14224747-14224836,14224906-14225025,
14225343-14225528,14225678-14225839,14226958-14227002
Length = 360
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 316 GMVCSSPVSKCNILMRPPAYWAR 248
G C S S N+ +RPP YW R
Sbjct: 181 GAYCMSMASTYNLKLRPPEYWRR 203
>10_07_0019 + 11931519-11932310
Length = 263
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 365 RCSRNRWIRSDHSSRGGVFSFRRQAG 442
RC R W RS+ +SRGG + RR AG
Sbjct: 39 RC-RRWWCRSEPTSRGGGWGGRRDAG 63
>09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189
Length = 330
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 272 APSGVLGTKAAAPLAWMCLIRG 207
+P V G AAA LAW+C RG
Sbjct: 303 SPLPVAGQAAAAVLAWLCTARG 324
>01_01_1103 - 8744873-8745724
Length = 283
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 264 GGRMRMLHLETGDEQTMPKTKHGISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLG 443
GGR R +E+ + K + ++ HG D A A G L +AP V+ G G
Sbjct: 217 GGRKRRGRRTGREEEELEKERLFMALHGYDVAVARACHAGALHPSVAPNVSGMGRGAEDG 276
Query: 444 HG 449
G
Sbjct: 277 WG 278
>10_06_0078 +
10416950-10417174,10417595-10417679,10417782-10417900,
10418200-10418287,10419400-10419452,10419876-10420015,
10420094-10420166,10420243-10420311,10420632-10420844,
10422304-10422498,10422581-10422658,10423456-10423590
Length = 490
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 586 YIR*INTVAIQKHEEIAPKECSECQRFFV 672
YIR +A+ + P+EC+EC FV
Sbjct: 282 YIRDKRNIALPNFSPLVPQECAECGHNFV 310
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 201 HCSSNQTHPSQRGCGLRAQYAGGR 272
HCS +TH ++ C L A+ A GR
Sbjct: 32 HCSPQRTHDARGRCRLTAKSANGR 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,237,278
Number of Sequences: 37544
Number of extensions: 480364
Number of successful extensions: 1294
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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