Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0174
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)                       30   1.6  
SB_563| Best HMM Match : Ank (HMM E-Value=0)                           29   2.8  
SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)                   29   3.7  
SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   28   8.6  
SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_36768| Best HMM Match : DSBA (HMM E-Value=0.057)                    28   8.6  

>SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 635

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 282 LHLETGDEQTMPKTKHGISQHGKDQAR-DDALETGGLDLIIAPGVAFSRSGDRLGHGGGY 458
           L  +TGDE    K  HG+    KDQ + +DAL      L +     F ++GD  G    Y
Sbjct: 527 LFQKTGDESCQAKAYHGMGNVHKDQGKYEDALNNYQHALSL-----FQKTGDESGQANAY 581


>SB_563| Best HMM Match : Ank (HMM E-Value=0)
          Length = 753

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 645 FFGCDFFMFLYSYSIYSANI-TSSTFWSCSLVGTSST 538
           FF C F +FL  YS+Y A   TS    +C    + ST
Sbjct: 578 FFYCVFLVFLTGYSVYDAQAKTSVNMTTCDYPASYST 614


>SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)
          Length = 605

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = +1

Query: 22  IKPNPAKALLRNEIAAKIA--ALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENE 195
           IK NP+  +++   A  +   A T  +++  ++ ++      +   S   +   +++E++
Sbjct: 81  IKFNPSPLMVKTIKAHCLIDYAATQNKQEAVAESLFHHFFELAHNISCEDVLQQVASESD 140

Query: 196 IDTAPLIKHIQARGAAAFV 252
           +DT+  I HIQ +G AA V
Sbjct: 141 LDTSAAIMHIQDQGVAARV 159


>SB_57101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 353 PSQGRCSRNRWIRSDHSSRGGVFSFRRQAGTRRWILRQ 466
           PS  R + N W RS H+ +         +GT +W+LRQ
Sbjct: 13  PSHPRAALNTWGRSSHTIKN-----HFDSGTSQWLLRQ 45


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/101 (21%), Positives = 41/101 (40%)
 Frame = -1

Query: 362  PGLVFPMLRYPVFSFWHGLLITGLQV*HPHAPSGVLGTKAAAPLAWMCLIRGAVSISFSV 183
            P  +   LR   F+F++               SGV   +    LAW   I  + + +   
Sbjct: 2546 PSKLTKKLRAGKFAFFYNECFESNGASRRMCRSGVFKGQVLYFLAWFLCIATSFASAVVT 2605

Query: 182  LM*RAIRLDDLYHEWLITFS*TI*DCLFFSSFVKAAILAAI 60
            +M   +   D+  +W ++F  +  +  F    +K A+LAA+
Sbjct: 2606 IMYSLMWKADISEKWCVSFFLSFIEDAFLIQPIKVALLAAL 2646


>SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 417  FSRSGDRLGHGGGYYDKFITNLRLNPETAPK 509
            FSR+    G+GGG+YD+  + L+   +  PK
Sbjct: 1057 FSRTSFSQGYGGGFYDEAPSKLQPFGQRGPK 1087


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 375 LEHRPWLGLSHAEISRV*FLAWSAHHRSPSVTSSCALRR 259
           LEH P+   +H+    + ++ W+  H+  + T+S  LRR
Sbjct: 100 LEHTPYRANTHSPCVFMSYVPWARVHKDRNDTNSTLLRR 138


>SB_36768| Best HMM Match : DSBA (HMM E-Value=0.057)
          Length = 190

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +1

Query: 22  IKPNPAKALLRNEIAAKIA--ALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENE 195
           IK NP+  +++   A  +   A T  +++  ++ ++      +   S   +   +++E++
Sbjct: 2   IKFNPSPLMVKTIKAHCLIDYAATQNKQEAVAESLFHHFFELAHNISREDVLQQVASESD 61

Query: 196 IDTAPLIKHIQARGAAAFV 252
           +DT+  I HIQ  G AA V
Sbjct: 62  LDTSAAIMHIQDLGVAARV 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,861,978
Number of Sequences: 59808
Number of extensions: 528018
Number of successful extensions: 1151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)