Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0174
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical ...    62   5e-10
Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical...    29   3.3  

>AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical
           protein Y106G6E.4 protein.
          Length = 206

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 34/67 (50%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +3

Query: 312 MPKTKHGISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGGGYYDKFI-TNLRL 488
           +P T  GI Q           ETG LDLI+APGVAFS  G R GHG GYYD+F  T+ + 
Sbjct: 102 LPSTLWGIRQPEPKWKWQSYHETGPLDLILAPGVAFSPYGLRCGHGKGYYDRFFSTHHKH 161

Query: 489 NPETAPK 509
            PE +PK
Sbjct: 162 FPENSPK 168



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 29/87 (33%), Positives = 50/87 (57%)
 Frame = +1

Query: 13  MSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTEN 192
           MS IK    K+ LR  +   +  ++ EE +RQ++ V+EK+I   W++ S R+++Y+ST  
Sbjct: 1   MSAIKE--VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG 58

Query: 193 EIDTAPLIKHIQARGAAAFVPSTPEGA 273
           EI T  +I+     G   F+P   +G+
Sbjct: 59  EIQTDSIIQKALEMGKEVFIPQFTKGS 85


>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 701 IYNIFFKDYRTKNRWHSEHSLGAISSCFCI 612
           I + FF DY  K R +  ++L A S C CI
Sbjct: 151 IASFFFSDYEKKQRSYLGYTLLATSQCCCI 180


>AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical
           protein Y56A3A.28 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 437 AGTRRWILRQVHH*FEAQSRNSSEIVAVAFNCQVVDEVPTNEQDQKVDEV 586
           A TRR  LR+ H    A + ++S    V    ++++E P  ++D + +EV
Sbjct: 335 AATRRRQLREDHTYISAAAASTSNEPYVEEEEEIIEEAPIGDEDDEEEEV 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,773,557
Number of Sequences: 27780
Number of extensions: 391627
Number of successful extensions: 949
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)