Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0174
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase (...    50   2e-06
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    32   0.33 
At1g21210.1 68414.m02651 wall-associated kinase 4                      30   1.7  
At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative...    29   3.0  
At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative...    29   3.0  

>At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase
           (5-FCL) nearly identical to gi:22087553
          Length = 277

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +3

Query: 273 MRMLHLETGDEQTMPKTK----HGISQHGKDQARDDALETGG-LDLIIAPGVAFSRSGDR 437
           MRMLH+   ++             +   G D  R+D L+    +DL I PG+AF R G R
Sbjct: 147 MRMLHISHMEDLVANSMNILEPAPVDAQGND--REDVLQADEPIDLFILPGLAFDRCGRR 204

Query: 438 LGHGGGYYDKFI 473
           LG GGGYYD F+
Sbjct: 205 LGRGGGYYDTFL 216



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 40  KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPL 213
           K ++R+ +   + A+    + +Q + + + V+   W+KS   +  Y+S +  NE+DT+ +
Sbjct: 60  KRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWFKSCKGLCAYISCKSLNEVDTSKI 119

Query: 214 IKHI 225
           +  I
Sbjct: 120 LSEI 123


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 327 HGISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGGGYY 461
           HG   HG  +        GG+  IIA GVA +     + H  G+Y
Sbjct: 83  HGYPSHGYPRPSHSGHHHGGIGAIIAGGVAAAAGAHHMSHHHGHY 127


>At1g21210.1 68414.m02651 wall-associated kinase 4
          Length = 738

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 208 EQCLSHFRCSCREQYDLMICT 146
           E  L HFRC+CR +Y+L   T
Sbjct: 301 ENKLGHFRCNCRSRYELNTTT 321


>At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 489

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 316 GMVCSSPVSKCNILMRPPAYW 254
           G  C S  S  N+ MRPP YW
Sbjct: 443 GAYCMSMASTYNLKMRPPEYW 463


>At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 484

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 316 GMVCSSPVSKCNILMRPPAYW 254
           G  C S  S  N+ MRPP YW
Sbjct: 438 GAYCMSMASTYNLKMRPPEYW 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,066
Number of Sequences: 28952
Number of extensions: 369288
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)