Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0172
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 166 3e-42
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 137 2e-33
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 86 4e-18
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 66 4e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 7e-06
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 43 4e-05
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 41 2e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 41 2e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 5e-04
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 37 0.003
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 35 0.013
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 34 0.023
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 32 0.094
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.16
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.22
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 31 0.22
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 29 0.87
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 2.7
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.7
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 26 4.7
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 6.1
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 26 6.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 8.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 8.1
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 8.1
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 166 bits (403), Expect = 3e-42
Identities = 75/83 (90%), Positives = 80/83 (96%)
Frame = +1
Query: 256 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREEL 435
TIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL
Sbjct: 48 TIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEEL 107
Query: 436 MRMLSEDELRDAVLLIFANKQDL 504
RML+EDELRDA+LL+FANKQDL
Sbjct: 108 QRMLNEDELRDALLLVFANKQDL 130
Score = 97.9 bits (233), Expect = 1e-21
Identities = 43/48 (89%), Positives = 45/48 (93%)
Frame = +3
Query: 507 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 650
NAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 132 NAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
Score = 72.5 bits (170), Expect = 5e-14
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +2
Query: 152 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPLL 262
FGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIP +
Sbjct: 13 FGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 49
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 137 bits (331), Expect = 2e-33
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 256 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREEL 435
T+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL
Sbjct: 52 TVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQEL 111
Query: 436 MRMLSEDELRDAVLLIFANKQDL 504
R++S+ E+RD +LL+ ANKQDL
Sbjct: 112 HRIISDREMRDCLLLVLANKQDL 134
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +2
Query: 146 RPFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 256
R F KEMRILM+GLDAAGKTTILYKLKL + V TIP
Sbjct: 15 RLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIP 51
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +3
Query: 510 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 647
A++ A+ITD L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 137 ALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 86.2 bits (204), Expect = 4e-18
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +1
Query: 256 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREEL 435
T GF + T+E + + FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R L
Sbjct: 47 TFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTL 106
Query: 436 MRMLSEDELRDAVLLIFANKQDL 504
+L E++L +L+ ANK D+
Sbjct: 107 QELLVEEKLLFTSILVLANKSDV 129
Score = 33.9 bits (74), Expect = 0.023
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 158 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI 253
++E+R+L++GLD AGKTTIL K L E V +
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEV 44
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 504 ANAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 647
+ A+++ EI+ L + ++ +W I + A +G + + + WL+N LK
Sbjct: 130 SGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 66.5 bits (155), Expect = 4e-12
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +1
Query: 274 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSE 453
E + N+ FT +D+GG + R LWR YF G++++VD D ER+ E++ EL +L+
Sbjct: 57 EELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAM 116
Query: 454 DELRDAVLLIFANKQD 501
+EL LI NK D
Sbjct: 117 EELARVPFLILGNKID 132
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 161 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPLL 262
K ++L +GLD AGKTT+L+ LK + P L
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +1
Query: 253 STIG--FNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGE 420
STIG F + T E K + +WD GQ++ R + Y++ G+I V D D++
Sbjct: 39 STIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNN 98
Query: 421 AREELMRMLSEDELRDAVLLIFANKQDL 504
++ L + + L+ NK D+
Sbjct: 99 VKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +1
Query: 244 NNNSTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IG 417
+ NST+G + + ++ ++DVGGQ R W + F+N +IF V ND ++
Sbjct: 175 SRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYE 234
Query: 418 EAREELMRMLSEDELRDAVL 477
A E R++ L D+++
Sbjct: 235 RAAPERNRLVESISLFDSII 254
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 259 IGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 426
I F + T+E K I +WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 44 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +1
Query: 238 NCNNNSTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 405
N + STIG T ++ K I +WD GQ++ R + Y++ G + V D +
Sbjct: 36 NIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQ 95
Query: 406 ERIGEAREELMRMLSEDELRDAVLLIFANKQDL 504
L + L E + V+++ NK DL
Sbjct: 96 SSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 283 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSE 453
+ K I +WD GQ+K R + R+Y++ G + V D +++ EEL LS+
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSF----EELSSWLSD 110
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Frame = +1
Query: 256 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDR 405
T G + ET + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 221 TTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSG 280
Query: 406 ERIGEAREELMRMLSEDELRDAVLLIFANKQDL 504
++ EA + + ++ +++F NK DL
Sbjct: 281 NQMQEALLLWDSICNSSWFSESAMILFLNKLDL 313
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 155 GKKEMRILMVGLDAAGKTTILYKLKL 232
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 34.7 bits (76), Expect = 0.013
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +1
Query: 253 STIG--FNVETV---EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIG 417
STIG F +T+ E ++ +WD GQ++ + L Y++N I V D +
Sbjct: 45 STIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLE 104
Query: 418 EAREELMRMLSEDELRDAVLLIFANKQDL 504
+A+ ++ L V+ + NK DL
Sbjct: 105 KAK-SWIKELQRQAPEGIVIALAGNKLDL 132
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 33.9 bits (74), Expect = 0.023
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = +1
Query: 280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDE 459
+E + + +WD GQ++ R L Y +++ I V D + E+ + + +
Sbjct: 55 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAER 113
Query: 460 LRDAVLLIFANKQDL 504
D ++++ NK DL
Sbjct: 114 GDDVIIVLVGNKTDL 128
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 450
V+ K ++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 52 VDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQAS 111
Query: 451 EDELRDAVLLIFANKQDL 504
++ NK D+
Sbjct: 112 PSNPETFPFILLGNKVDV 129
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 292 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 408
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 259 IGFNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 429
+ F +T+ +N I+F++WD+GGQ + + + ++F+ D + + + +E
Sbjct: 45 VNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLS 450
V+ K ++ +WD GQ++ + L +++ + V + N+ + + R+E + S
Sbjct: 52 VDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS 111
Query: 451 EDE 459
+DE
Sbjct: 112 QDE 114
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 28.7 bits (61), Expect = 0.87
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 253 STIGFNVETVEYKN----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 405
+T+G V + + I F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 40 ATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -1
Query: 193 IQTNHQYSHFLFAKRPLNKFANIFPILNYYEYNFQKQSRIREKTQHQ*IPNN-SRMSKWR 17
I +N ++ + +FA IL Y E K I++ +Q N ++ SKW+
Sbjct: 233 IDSNWRWGYGMFAIIMPAVMTPAVIILMYLERQANKDENIKKIINYQTEEKNKNKQSKWQ 292
Query: 16 RTWK 5
+ WK
Sbjct: 293 KLWK 296
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 173 ILMVGLDAAGKTTILYKLKL 232
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 485 LRINRICQRNERSRDNRQTGSAFAAQP*LVHPSDMRHFRRRTVRGSRLAL 634
+RIN + N+ R +G A A H SD+R + V GS ++
Sbjct: 167 IRINILPNGNDNFIKKRNSGFALAPIACYNHTSDLRKLLKHKVTGSNASI 216
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 351 PPQWSDFVLASNIPHSKTNVFVFY 280
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 614 VQSVSGSGACRLDVPVTVAQRMQTQFVCYL---GCVHCVG 504
+ S S CR + +V + T ++C+L G ++CVG
Sbjct: 3548 ISSAKLSTICRSVLKASVNSALLTSWICFLNSIGAINCVG 3587
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 280 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI--FVVDSND 402
V+ +I ++WD GQ++ L + +T ++ F VDS D
Sbjct: 56 VDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRD 98
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +3
Query: 3 NFHVRRHFDIRELLGIHWCC 62
N + HF+ +G +WCC
Sbjct: 469 NHRIPHHFESHTNIGANWCC 488
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 161 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 256
KE+R+++ G GK++++ L + VT+IP
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIP 33
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 619 PSYSPSPEVAHVAWMYQL 566
P+ SP PEV+H W+ L
Sbjct: 16 PNSSPDPEVSHKLWVSSL 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,001
Number of Sequences: 5004
Number of extensions: 67989
Number of successful extensions: 242
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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