Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0167
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   3.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.7  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   8.7  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 325 PPNRVSNETMKVVVFQRRSRETISTYATPLMSPYNARLESSSTGSSFPADSPK 167
           P  +VS+ ++      +     +ST +T    PY A  + ++TGSSF AD  K
Sbjct: 226 PRPQVSSSSITTNATYQNLPSPVST-STTSSQPYGAFHQPATTGSSFVADKWK 277


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 290  SGFSATIARNDLHLCYTSHVSLQCQTRVKLNRVFFPR*FSQARSLGCGFAR 138
            + FS  + R    + YT H  L+ Q  V   R FF    + A +L   F R
Sbjct: 2068 AAFSRFLHRVSFSVIYTKHNDLRLQETVHSTRAFFEDLDTHADTLTFDFPR 2118


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 482 LSKNNAGVLGQLSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIKS 631
           LS    G+  +L+   N   S RAK+  +   S H+ CE    RS  +++
Sbjct: 416 LSSEPNGLKKRLTNSSNYEASPRAKSLNLSQVSLHQACEPEYNRSSLVRA 465


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 593  SPYAY*TSGSSQLLPFCSTRGF 528
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 486 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 337
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,370
Number of Sequences: 5004
Number of extensions: 64208
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)