Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0167
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32679-4|CAA83591.1|  315|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical p...    28   6.1  

>Z32679-4|CAA83591.1|  315|Caenorhabditis elegans Hypothetical
           protein C05B5.4 protein.
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 280 QRRSRETISTYATPLMSPYNARLESSSTGSSFPADSPKPV 161
           ++ SR  +S    P + PYN+R +   T    P D  +P+
Sbjct: 241 KKSSRRNVSVNVQPRLIPYNSRCDDYDTRYDMPWDQQRPL 280


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/90 (24%), Positives = 36/90 (40%)
 Frame = -2

Query: 415 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISTYATPL 236
           T+ +   TSP  T+GT   APA++      P N  S+ T         S  T  T   P+
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 681

Query: 235 MSPYNARLESSSTGSSFPADSPKPVPLAVV 146
            +       S++T ++    + +  P   V
Sbjct: 682 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 711


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/90 (24%), Positives = 36/90 (40%)
 Frame = -2

Query: 415 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISTYATPL 236
           T+ +   TSP  T+GT   APA++      P N  S+ T         S  T  T   P+
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 737

Query: 235 MSPYNARLESSSTGSSFPADSPKPVPLAVV 146
            +       S++T ++    + +  P   V
Sbjct: 738 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 767


>Z99281-48|CAE18025.2|  661|Caenorhabditis elegans Hypothetical
           protein Y57G11C.42 protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +1

Query: 502 CPRPAQRGQKPRVEQKGKSWLDPDVQYA*GLR-------KHGLSIL*YKEFLARGARKVT 660
           C RP  R  K R     KSW  PDV+    LR          + I  +   LAR  RK+ 
Sbjct: 338 CNRPISRLYKNRYVTPPKSWNRPDVRKTSPLRIRKKNFATTKIHITPFMGELARKRRKLD 397

Query: 661 TGITGLWQPSV 693
           +G +  W+ S+
Sbjct: 398 SGSSHEWKVSI 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,570
Number of Sequences: 27780
Number of extensions: 371256
Number of successful extensions: 1063
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)